GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004541-TA|BGIBMGA004541-PA|IPR001436|Alpha crystallin,
IPR002068|Heat shock protein Hsp20, IPR008978|HSP20-like chaperone
         (181 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   4.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.3  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 137 GVLTITAPRKVPDAVKGERKVPIAQTGPVRKEIKDQSEEAN 177
           G  T T      D +  E  +PI +TG   K I ++ E  N
Sbjct: 141 GKSTTTTVEVKRDIINPEDVIPIRRTGEGSKPIFEREEIKN 181


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 160  AQTGPVRKEIKDQSEEANE 178
            AQ G  + + K QS+EAN+
Sbjct: 1005 AQQGQAQAQAKPQSQEANK 1023


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 129 VESRLSSDGVLTITAPRKVPDAVKGERKVPIAQTGPVRKEIKDQSEEAN 177
           +E R    G  TIT      D +  E  + I +TG   K I ++ E  N
Sbjct: 133 LEIRRDLPGKSTITTVEVKRDIINPEDVILIRRTGEGSKPIFEREEIKN 181


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 10  DFGSRRPRRLLDQHFGLALTPDDLLSVAAGPLLNREYYRPWRHLAAAARDVGSSIKV 66
           D G        D    + L  +  L+V A P+L   + +  ++L    R+ G++ K+
Sbjct: 329 DLGKLGEEEKADWWKDIMLLNEKTLAVPAPPVLPENHLKNAKYLDVIERNSGATDKI 385


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 10  DFGSRRPRRLLDQHFGLALTPDDLLSVAAGPLLNREYYRPWRHLAAAARDVGSSIKV 66
           D G        D    + L  +  L+V A P+L   + +  ++L    R+ G++ K+
Sbjct: 329 DLGKLGEEEKADWWKDIMLLNEKTLAVPAPPVLPENHLKNAKYLDVIERNSGATDKI 385


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 10  DFGSRRPRRLLDQHFGLALTPDDLLSVAAGPLLNREYYRPWRHLAAAARDVGSSIKV 66
           D G        D    + L  +  L+V A P+L   + +  ++L    R+ G++ K+
Sbjct: 329 DLGKLGEEEKADWWKDIMLLNEKTLAVPAPPVLPENHLKNAKYLDVIERNSGATDKI 385


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,975
Number of Sequences: 429
Number of extensions: 1809
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 181
length of database: 140,377
effective HSP length: 54
effective length of query: 127
effective length of database: 117,211
effective search space: 14885797
effective search space used: 14885797
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)