GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004540-TA|BGIBMGA004540-PA|IPR001436|Alpha crystallin,
IPR002068|Heat shock protein Hsp20, IPR008978|HSP20-like chaperone
         (177 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.97 
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    21   9.0  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    21   9.0  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    21   9.0  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    21   9.0  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    21   9.0  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    21   9.0  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    21   9.0  
AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex det...    21   9.0  
AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex det...    21   9.0  
AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex det...    21   9.0  
AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex det...    21   9.0  
AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex det...    21   9.0  
AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex det...    21   9.0  
AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex det...    21   9.0  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   9.0  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   9.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 141 IAPRKVPPAVEGERKIPIAQTGPVRKEVKDQSNGD 175
           I+ +K+ PA     K  +  T  ++KEV+D    D
Sbjct: 269 ISKKKLSPATPKGSKCSMITTPEIKKEVEDMEYDD 303


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 136 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 164
           G L+   PR +PP +   R  P  + GP+
Sbjct: 123 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 151


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 136 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 164
           G L+   PR +PP +   R  P  + GP+
Sbjct: 123 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 151


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 136 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 164
           G L+   PR +PP +   R  P  + GP+
Sbjct: 123 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 151


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 136 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 164
           G L+   PR +PP +   R  P  + GP+
Sbjct: 123 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 151


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 136 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 164
           G L+   PR +PP +   R  P  + GP+
Sbjct: 123 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 151


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 136 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 164
           G L+   PR +PP +   R  P  + GP+
Sbjct: 123 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 151


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 136 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 164
           G L+   PR +PP +   R  P  + GP+
Sbjct: 123 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 151


>AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 136 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 164
           G L+   PR +PP +   R  P  + GP+
Sbjct: 372 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 400


>AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 136 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 164
           G L+   PR +PP +   R  P  + GP+
Sbjct: 372 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 400


>AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 136 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 164
           G L+   PR +PP +   R  P  + GP+
Sbjct: 372 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 400


>AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 136 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 164
           G L+   PR +PP +   R  P  + GP+
Sbjct: 372 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 400


>AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 136 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 164
           G L+   PR +PP +   R  P  + GP+
Sbjct: 372 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 400


>AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 136 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 164
           G L+   PR +PP +   R  P  + GP+
Sbjct: 372 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 400


>AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 136 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 164
           G L+   PR +PP +   R  P  + GP+
Sbjct: 371 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 399


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 136 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 164
           G L+   PR +PP +   R  P  + GP+
Sbjct: 356 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 384


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 136 GVLSVIAPRKVPPAVEGERKIPIAQTGPV 164
           G L+   PR +PP +   R  P  + GP+
Sbjct: 372 GPLTPFPPRFIPPDMYRLRPPPNPRFGPM 400


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,063
Number of Sequences: 429
Number of extensions: 1996
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 177
length of database: 140,377
effective HSP length: 54
effective length of query: 123
effective length of database: 117,211
effective search space: 14416953
effective search space used: 14416953
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)