GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004537-TA|BGIBMGA004537-PA|IPR000387|Tyrosine specific
protein phosphatase and dual specificity protein phosphatase,
IPR000242|Tyrosine specific protein phosphatase, IPR003595|Protein
tyrosine phosphatase, catalytic region
         (971 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    25   3.0  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           23   9.1  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           23   9.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   9.1  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 5   SKEYEIVVSRSNALGHTSHHSHRPENRLKNRYLNITACER-PLP 47
           SKE +I+ S SN    T H+++  +N  K  Y NI   E+ P+P
Sbjct: 309 SKESKIISSLSN---KTIHNNNNYKNYNKKLYYNIINIEQIPVP 349


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.4 bits (48), Expect = 9.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 368 HVRSGNTEVEFSNTRQYLLKLL 389
           H + G T+ EF N ++ +L++L
Sbjct: 117 HKKRGQTKEEFQNLKEVMLEVL 138


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.4 bits (48), Expect = 9.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 368 HVRSGNTEVEFSNTRQYLLKLL 389
           H + G T+ EF N ++ +L++L
Sbjct: 117 HKKRGQTKEEFQNLKEVMLEVL 138


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 9.1
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 83  ADHLARIKAKLRKRDKPDRPPSIKQSKPP 111
           AD L +IK      +  D PPS+  S PP
Sbjct: 112 ADQL-KIKGLCEVPESRDGPPSVSLSSPP 139


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 261,562
Number of Sequences: 429
Number of extensions: 10654
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 5
length of query: 971
length of database: 140,377
effective HSP length: 64
effective length of query: 907
effective length of database: 112,921
effective search space: 102419347
effective search space used: 102419347
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)