GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004534-TA|BGIBMGA004534-PA|IPR001757|ATPase, P-type,
K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter, IPR006069|ATPase, P-type cation
exchange, alpha subunit, IPR006408|Calcium-translocating P-type
ATPase, PMCA-type, IPR008250|E1-E2 ATPase-associated region,
IPR005834|Haloacid dehalogenase-like hydrolase, IPR006068|ATPase,
P-type cation-transporter, C-terminal
         (925 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    25   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   8.6  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 17/65 (26%), Positives = 27/65 (41%)

Query: 620 VNLIMDTLASLALATEMPTPDLLQRKPYGRTKPLISRTMMKNILGQAIYQLFIIFMLLFV 679
           V  I D      L   + T   L    Y  TK     T   +++G  +Y L  +FML   
Sbjct: 117 VTAIGDAYGVALLLHMLTTTITLTLLAYQATKIHAVDTYAASVVGYLLYSLGQVFMLCIF 176

Query: 680 GDKML 684
           G++++
Sbjct: 177 GNRLI 181


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 680 GDKMLNIPSGRYQPL 694
           G K+L IP G +QPL
Sbjct: 101 GCKVLRIPEGAFQPL 115


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,059
Number of Sequences: 429
Number of extensions: 9504
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 2
length of query: 925
length of database: 140,377
effective HSP length: 64
effective length of query: 861
effective length of database: 112,921
effective search space: 97224981
effective search space used: 97224981
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)