GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004533-TA|BGIBMGA004533-PA|IPR001757|ATPase, P-type,
K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter, IPR004014|ATPase, P-type
cation-transporter, N-terminal, IPR008250|E1-E2 ATPase-associated
region
         (330 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.39 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   0.52 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.69 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 44  TCEARISIVCLSGSKADLQHRREVFGSNLIP--PKPPKTFLTLVWEALQ 90
           TC  ++      G K DL+H  E  GSN++       + ++++ W+ L+
Sbjct: 166 TCVLKLGSWTYDGFKVDLRHMDEKSGSNVVDVGVDLSEFYMSVEWDILE 214


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 44  TCEARISIVCLSGSKADLQHRREVFGSNLIPPKPPKT--FLTLVWEALQ 90
           +C  +      +G++ DL+H ++  GSNL+      +  +L++ W+ L+
Sbjct: 171 SCIMKFGSWTYNGAQVDLKHMKQEAGSNLVAKGIDLSDFYLSVEWDILE 219


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 44  TCEARISIVCLSGSKADLQHRREVFGSNLIP--PKPPKTFLTLVWEALQ 90
           TC  +       G K DL+H  E  GSN++       + ++++ W+ L+
Sbjct: 166 TCVLKFGSWTYDGFKVDLRHMDEKSGSNVVDVGVDLSEFYMSVEWDILE 214


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 44  TCEARISIVCLSGSKADLQHRREVFGSNLI 73
           TC  +       G + DL+H  E+ G N++
Sbjct: 162 TCVMKFGSWTYDGFQVDLRHIDEIRGKNVV 191


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,789
Number of Sequences: 429
Number of extensions: 2938
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 330
length of database: 140,377
effective HSP length: 58
effective length of query: 272
effective length of database: 115,495
effective search space: 31414640
effective search space used: 31414640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)