GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004530-TA|BGIBMGA004530-PA|IPR006667|MgtE integral
membrane region
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     30   0.49 
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    29   1.1  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    27   3.4  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    27   6.0  

>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 211 ICVYYSLLPLWVFIVWRNKYTKTVLTSGWTP-VISALFISGIGGIVL 256
           IC +   L +WV  VW N     +    WTP ++  + ISG GG  L
Sbjct: 379 ICKFIMKLSVWVIDVWSNFLLHCL---PWTPFLVQVVAISGFGGASL 422


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 21  VAVPFFIAGCGTIGAGLVLGTV 42
           +A PF  AG GT+ AGL LGT+
Sbjct: 192 LAAPFVAAGLGTLFAGLGLGTM 213


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 243 ISALFISGIGGIVLDQAVDYFRGYEVFQPIVNGIGGNLVCVQSSRLATHLHQTAIPGILP 302
           I+A  + G  GI LD+ V+ + GYEV   + N    N +    +  +  L  ++   ++ 
Sbjct: 42  INAFCVFGASGIYLDKLVNKWFGYEVLD-LAN--SDNALVTGLATSSGILLYSSWASVMQ 98

Query: 303 ENTKIIEWPWKTLFFGTTAANVARMLLILAVFGQIIFMVVADFVYQ 348
           E+   +E   K   F T    V +       FG I+F +   F+++
Sbjct: 99  ESFHFLE---KISMFDTFLVRVFQFCAFF--FGGIVFYIFNHFLHK 139


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 246 LFISGIGGIVLDQAVDYFRGYEVFQPIVNGIGGNLV 281
           ++I G G ++  +   Y  GY++   I+ GIGG ++
Sbjct: 442 VYILGQGLMIRYRGEQYNWGYQIMPQIIVGIGGGVI 477


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,494,454
Number of Sequences: 5004
Number of extensions: 54075
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 5
length of query: 391
length of database: 2,362,478
effective HSP length: 74
effective length of query: 317
effective length of database: 1,992,182
effective search space: 631521694
effective search space used: 631521694
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)