GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004530-TA|BGIBMGA004530-PA|IPR006667|MgtE integral
membrane region
         (391 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0354 - 3113931-3113933,3114229-3114244,3114343-3114542,311...    31   1.2  
01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553...    31   2.1  
11_01_0292 - 2200714-2201478,2202691-2203395                           29   6.4  
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    29   6.4  
11_01_0550 + 4355857-4356051,4357287-4357355,4357429-4357561,435...    29   8.5  
01_07_0351 + 42952504-42952692,42952824-42952910,42953039-429532...    29   8.5  
01_06_0127 - 26718452-26718989,26719082-26720211                       29   8.5  

>08_01_0354 -
           3113931-3113933,3114229-3114244,3114343-3114542,
           3114653-3114731,3114844-3115209,3115557-3115773,
           3116455-3116593,3116958-3117228,3117986-3118095,
           3118967-3119122
          Length = 518

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 14/53 (26%), Positives = 29/53 (54%)

Query: 228 NKYTKTVLTSGWTPVISALFISGIGGIVLDQAVDYFRGYEVFQPIVNGIGGNL 280
           ++ T  V   GWT V+ +L   GI  +  ++  +++ G EV+  + + +G N+
Sbjct: 441 SRSTTQVFPGGWTAVLVSLDNVGIWNLRSEKLDNWYNGQEVYVKVADPLGYNI 493


>01_07_0095 +
           41053562-41053603,41054609-41054846,41055064-41055312,
           41055419-41055469,41056044-41056256,41056305-41056367,
           41056422-41056474,41056953-41057067,41057150-41057404,
           41057531-41058618
          Length = 788

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 187 TVLAVTAQYMYEQIQVSLWQPIALICVYYSLLPLWVFIVWRNKYTKTVLTSGWTPVISAL 246
           TV+ VT  ++   I + +WQ   +  + + LL   V +V+ +     V   GW P++ AL
Sbjct: 432 TVMFVTT-FLMALIMIFVWQKNIIFALSFFLLFGSVEVVYLSSSLMKVTQGGWVPLVLAL 490

Query: 247 FISGI 251
               +
Sbjct: 491 IFMSV 495


>11_01_0292 - 2200714-2201478,2202691-2203395
          Length = 489

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 173 ATPLAASIGDIVSNTVLAVTAQYMYEQIQVSLWQPIALICVYYSLLPLWVFIVWRNKYTK 232
           A P A+   D+    + A    Y+Y   ++ LWQ I L+  Y   + L V++   +   K
Sbjct: 137 AVPPASFARDVFFYLLAASGLFYIYLSAEIYLWQAIGLVLFYVFFVGLVVYMD-LDAEGK 195

Query: 233 TVLTSGWTPVISALFISGIGGIVLDQAV 260
            V T+          ++GIG +V+D  V
Sbjct: 196 AVSTT------ELEVVNGIGRVVMDLPV 217


>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
            23681200-23681559,23681645-23682086,23682199-23682332,
            23682479-23682680
          Length = 2391

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 173  ATPLAASIGDIVSNTVLAVTAQYMYEQIQVSLWQPIALICVYYSLLPLWVFIVWR 227
            ATP  ++ GD    T+    A+  Y+ +  +L QP+    V YS+L L +F+  R
Sbjct: 2154 ATPTRSNAGDATKVTL----ARTWYQALWATLCQPLLQTLVPYSVLGLVIFLPLR 2204


>11_01_0550 +
           4355857-4356051,4357287-4357355,4357429-4357561,
           4358248-4358454,4358601-4358716,4358814-4358918,
           4359008-4359180,4359273-4359363,4359682-4359831,
           4359928-4360173
          Length = 494

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 297 IPGILPENTKIIEWPWKTLFFGTTAANVARMLLILA 332
           + G +PE T ++E  W  +F+ T + NV R+++  A
Sbjct: 180 VEGGVPETTALLEQKWDKIFY-TGSGNVGRIVMAAA 214


>01_07_0351 +
           42952504-42952692,42952824-42952910,42953039-42953257,
           42953329-42953502,42954799-42954852,42954983-42955123,
           42955599-42955637,42956689-42957045
          Length = 419

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 193 AQYMYEQIQVSLWQPIALICVYYSLLPLWVFI-VWRNKYTKTVLTSGWTPVISALF 247
           A Y   +  ++LWQP       +SL  LW+    ++NK   T+  +GW  V  AL+
Sbjct: 176 ANYYGTKATINLWQPTIATSGDFSLAQLWISAGSYQNKDLNTI-EAGW-QVYPALY 229


>01_06_0127 - 26718452-26718989,26719082-26720211
          Length = 555

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 327 MLLILAVFGQIIFMVVADFVYQGTVTIQFAFGITYLTCALLQVHSPGSNSFAL 379
           M+ ++  F   +FM+    +Y    T  F FG+ Y          P S +F L
Sbjct: 379 MIQLIGFFMMSMFMLAMGILYDYLKTHHFLFGLLYALTFFFANFGPNSTTFVL 431


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,297,836
Number of Sequences: 37544
Number of extensions: 334893
Number of successful extensions: 989
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 985
Number of HSP's gapped (non-prelim): 8
length of query: 391
length of database: 14,793,348
effective HSP length: 83
effective length of query: 308
effective length of database: 11,677,196
effective search space: 3596576368
effective search space used: 3596576368
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 61 (28.7 bits)