GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004530-TA|BGIBMGA004530-PA|IPR006667|MgtE integral
membrane region
         (391 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    27   0.27 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   2.6  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 27.1 bits (57), Expect = 0.27
 Identities = 9/39 (23%), Positives = 21/39 (53%)

Query: 329 LILAVFGQIIFMVVADFVYQGTVTIQFAFGITYLTCALL 367
           ++L   G I+F +++ +V++  +        T+L C +L
Sbjct: 336 IVLGAIGSIVFYIISRYVFRSALEDYCNIVATHLVCGIL 374


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 281 VCVQSSRLATHLHQTAIPGILPEN-TKIIEWPWKTLFFGTTAANVARMLL 329
           V VQ ++   HLH T+ P   P +  +  + P       +T + +AR L+
Sbjct: 662 VIVQHTQSQLHLHLTSPPARSPSSQAQASQCPQTASLLSSTHSTLARSLM 711


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,271
Number of Sequences: 429
Number of extensions: 3199
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 391
length of database: 140,377
effective HSP length: 59
effective length of query: 332
effective length of database: 115,066
effective search space: 38201912
effective search space used: 38201912
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)