GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004529-TA|BGIBMGA004529-PA|undefined
         (79 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   0.79 
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   2.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   2.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    20   4.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   4.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   4.2  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    19   5.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    19   5.5  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    19   7.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   7.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    19   7.3  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    19   9.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   9.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 0.79
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 55  QVSRKRGNKRYTAKNFKEFSREY 77
           Q  RKRG + YT     E  +E+
Sbjct: 267 QFERKRGRQTYTRYQTLELEKEF 289


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 20.6 bits (41), Expect = 2.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 58 RKRGNKRYTAKNFKEFSREY 77
          RKRG + YT     E  +E+
Sbjct: 8  RKRGRQTYTRYQTLELEKEF 27


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 2.4
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 35  PEKKIPDTDAEKQPLSGVSDQV-SRKRGNKRYTAKNFKEFSREY 77
           P  + P    E +   G++    S++RG   YT    +E +R +
Sbjct: 112 PRMRAPSFICENETRQGLTLHYRSKRRGFVYYTMGQIREVARHF 155


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 19.8 bits (39), Expect = 4.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 53  SDQVSRKRGNKRYTAKNFKEFSREY 77
           S + SR+R   R   + +KE  R Y
Sbjct: 217 SSRYSRERSCSRDRNREYKEKDRRY 241


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 19.8 bits (39), Expect = 4.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 53  SDQVSRKRGNKRYTAKNFKEFSREY 77
           S + SR+R   R   + +KE  R Y
Sbjct: 228 SSRYSRERSCSRDRNREYKEKDRRY 252


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 4.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 53  SDQVSRKRGNKRYTAKNFKEFSREY 77
           S + SR+R   R   + +KE  R Y
Sbjct: 228 SSRYSRERSCSRDRNREYKEKDRRY 252


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 33 GDPEKKIPDTDAEKQPLSGVSDQVSRKRGNKRYTAKNFKEFSRE 76
          G PE+K P T    + L+ +  + +    N+  T +  ++ SR+
Sbjct: 16 GSPEEKRPRTAFSAEQLARLKREFAE---NRYLTERRRQQLSRD 56


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 53  SDQVSRKRGNKRYTAKNFKEFSREY 77
           S   SR+R   R   + +KE  R Y
Sbjct: 228 SSHYSRERSCSRDRNREYKEKDRRY 252


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 19.0 bits (37), Expect = 7.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 58 RKRGNKRYTAKNFKEFSREY 77
          R+RG + YT     E  +E+
Sbjct: 8  RRRGRQTYTRFQTLELEKEF 27


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.0 bits (37), Expect = 7.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 22  SINSCGELKSPGDPEKKIPD 41
           +I + G  K P  PEKK  D
Sbjct: 198 AIGAYGPEKGPKVPEKKKED 217


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.0 bits (37), Expect = 7.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 38  KIPDTDAEKQPLSGVSDQVSRK 59
           +IP T   KQ   G +  +SRK
Sbjct: 302 RIPSTRINKQHTRGNNFSLSRK 323


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 18.6 bits (36), Expect = 9.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 53  SDQVSRKRGNKRYTAKNFKEFSREY 77
           S + SR+R   R   + ++E  R Y
Sbjct: 228 SSRYSRERSCSRDRNREYREKDRRY 252


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 18.6 bits (36), Expect = 9.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 4    SAQTTYETGIPDNH 17
            +  TTY    PDNH
Sbjct: 1469 AVMTTYPRINPDNH 1482


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.126    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,210
Number of Sequences: 429
Number of extensions: 1253
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 79
length of database: 140,377
effective HSP length: 47
effective length of query: 32
effective length of database: 120,214
effective search space:  3846848
effective search space used:  3846848
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.0 bits)
S2: 36 (18.6 bits)