GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004524-TA|BGIBMGA004524-PA|undefined
         (287 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.1  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 164 LFLHHFLYFIIGTGSMPLAIIIGGEIFPLADRGFCSVITRIFCSVYMFVNIKSAPYLFSW 223
           LF+ +F++ + G G + L ++I  +I  ++ +    +    F S+ + V + S  ++ S+
Sbjct: 12  LFIFNFVFAVCGLGILTLGVLIHLQILGVSKQIETGL---AFPSITLIV-LGSIIFVISF 67

Query: 224 VGVDGAF-SLYALIHSYSLIVTLILL 248
            G  GA    + +  +++  +  ILL
Sbjct: 68  FGCCGAIRESHCMTITFASFLLFILL 93


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.142    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,230
Number of Sequences: 429
Number of extensions: 2840
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 1
length of query: 287
length of database: 140,377
effective HSP length: 57
effective length of query: 230
effective length of database: 115,924
effective search space: 26662520
effective search space used: 26662520
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 43 (21.4 bits)