GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004520-TA|BGIBMGA004520-PA|undefined
         (82 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   6.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    19   8.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    19   8.0  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 3   IGQYDGCPTIL 13
           IG Y+G PT++
Sbjct: 421 IGGYNGLPTVM 431


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 25  EIRVGDTVTEELARATSDPFKYTNSAVNPNATRPAT 60
           +++   T +   A A ++P+    + V+P  T+  T
Sbjct: 876 KLQESSTDSRNPALALAEPYNQRGTVVSPPPTKRRT 911


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 25  EIRVGDTVTEELARATSDPFKYTNSAVNPNATRPAT 60
           +++   T +   A A ++P+    + V+P  T+  T
Sbjct: 914 KLQESSTDSRNPALALAEPYNQRGTVVSPPPTKRRT 949


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,845
Number of Sequences: 429
Number of extensions: 699
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 82
length of database: 140,377
effective HSP length: 47
effective length of query: 35
effective length of database: 120,214
effective search space:  4207490
effective search space used:  4207490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
S2: 37 (19.0 bits)