GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004517-TA|BGIBMGA004517-PA|IPR006640|Protein of unknown
function SprT
         (547 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.70 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.70 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.70 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    25   1.2  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        25   1.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   1.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   1.6  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   4.9  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   6.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   6.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   8.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   8.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.70
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 466  IQRHSKSIDITKKCCGHCRGTFQLILNKKTKEGLVVSTPARSGGTGGFA 514
            + RH+ S ++    CG+   T+QL L    K G   S+P  S  T G A
Sbjct: 1453 LSRHATSHELKGLLCGN---TYQLYLTSHNKIGSSPSSPVLSVRTQGQA 1498


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.70
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 466  IQRHSKSIDITKKCCGHCRGTFQLILNKKTKEGLVVSTPARSGGTGGFA 514
            + RH+ S ++    CG+   T+QL L    K G   S+P  S  T G A
Sbjct: 1449 LSRHATSHELKGLLCGN---TYQLYLTSHNKIGSSPSSPVLSVRTQGQA 1494


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 26.2 bits (55), Expect = 0.70
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 279 LDVIEKRINDISVTPTVHRLSFMASLADN 307
           L ++ KR  DI+  PT + L + AS+A N
Sbjct: 814 LRILLKRFLDITTPPTPNLLRYFASIATN 842


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 286 INDISVTPTVHRLSFMASLADNVPSWRCHPEALQY 320
           +++   TP +H L +   +   +PS+ C      Y
Sbjct: 26  VDECQATPVIHFLQYPGCVPKPIPSYACRGRCSSY 60


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 307 NVPSWRCHPEALQYKDNYKALKEQLTRRWFEEFNRE 342
           NVP++ CH   L++++   + K  + + W ++F  E
Sbjct: 48  NVPTFMCHKYGLRFEE--VSEKYGILQNWMDKFRGE 81


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 164 GEVWKSIPSLFKSVHHGEFNGVSKKLYFEDEDD 196
           G +W++  +LF+ +     +G + K+ F+D  D
Sbjct: 322 GSIWETGKNLFEFIRKQVLSGSTGKVAFDDNGD 354


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 53  YTKSKNNNQTSTLSYSPILINDSSDSFSELAESENEPSKMGNVS 96
           YT S N+N T   + +P+ IN   D+ S + +S    + + N S
Sbjct: 531 YTSSVNSNLTVNQTVNPVAINIPGDT-SIIVDSSTSGATIVNYS 573


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 130 DQPSTPNEIANESLDNCSLKTVQKSQKKLLNDLYGEVWKSIPSLFKSVHHGEFNGVSKKL 189
           +Q S  NE +       S K   + +K+       ++  S+ + +K  ++  +N  +KKL
Sbjct: 46  EQKSYKNENSYRKYRETS-KERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNYNKKL 104

Query: 190 YFED 193
           Y+++
Sbjct: 105 YYKN 108


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 455 YTYKCAQCGYSIQR-HSKSIDITK 477
           Y Y+CA C Y+ +  HS  + + K
Sbjct: 43  YQYRCANCTYATKYCHSLKLHLRK 66


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 365 GTTTNRLIKTSSGARIRACSVKLSHKV 391
           G    + + TS+G+ +  C ++L H+V
Sbjct: 99  GILCKKTLGTSAGSLLHICMLELGHEV 125


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 322 DNYKA-LKEQLTRR--WFEEFNREVFD 345
           D+Y A L     RR  WF E+  EVFD
Sbjct: 264 DDYMASLTPDTNRRNPWFSEYWEEVFD 290


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 322 DNYKA-LKEQLTRR--WFEEFNREVFD 345
           D+Y A L     RR  WF E+  EVFD
Sbjct: 354 DDYMASLTPDTNRRNPWFSEYWEEVFD 380


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,996
Number of Sequences: 429
Number of extensions: 6574
Number of successful extensions: 33
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 12
length of query: 547
length of database: 140,377
effective HSP length: 61
effective length of query: 486
effective length of database: 114,208
effective search space: 55505088
effective search space used: 55505088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)