GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004516-TA|BGIBMGA004516-PA|IPR011047|Quinonprotein
alcohol dehydrogenase-like
         (1246 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   2.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   8.9  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 191 MDQQKKTLSEIEDMKRKMELVELGIPL 217
           +D +KK L  +ED + +M ++  G PL
Sbjct: 371 IDLRKKQLKSLEDWENEMNIITKGKPL 397


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 552 TESSRSYRMSLDKDFEEAENNMSKSTVDSLEVWSFVLKICQPLLFRHDKDKCYKE-THAV 610
           TE S      +  + EE E N  K  +DS+++    +++   +    D  KC  E   ++
Sbjct: 306 TELSTGMNDDIPPETEEEEENDKKLDLDSIDMMQLPIQLDDGIDILDDV-KCEDERVISI 364

Query: 611 P--KVWFAENPKTCRCVKDRAVVYEELETCKMSLV 643
           P  ++    N +T   + + A + +E   C  SL+
Sbjct: 365 PDKEITVPSNEETID-INNGAELMQETHVCFFSLL 398


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.129    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,243
Number of Sequences: 429
Number of extensions: 9408
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 4
length of query: 1246
length of database: 140,377
effective HSP length: 66
effective length of query: 1180
effective length of database: 112,063
effective search space: 132234340
effective search space used: 132234340
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 49 (23.8 bits)