GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004511-TA|BGIBMGA004511-PA|IPR003663|Sugar transporter,
IPR007114|Major facilitator superfamily, IPR005828|General substrate
transporter
         (491 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   1.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   3.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   3.3  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 410 INIFVSIKTLPYLFKTIGMHGAYCLYGVILVYCLTIAWFFLPETKDRTLQDIENEFRGK 468
           I+IF+ ++T    F ++ ++    L   + +Y L++A    P+TKD  +  +   F  K
Sbjct: 97  IDIFMGMRTYED-FLSVAVYCRDRLNPNLFIYALSVAILHRPDTKDLPVPPLTEVFPDK 154


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 386 TIAGEIFPLEYRSLSSGISAVFCSINIFVSIKTLP----YLFKTIGMHGA--YCLYGVIL 439
           T A + +P   R       A+ C ++  + +  +     Y+F+ +  +    +CL  ++ 
Sbjct: 401 TAAVDEWPRLLRKRKELFIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMF 460

Query: 440 VYCLTIAWFF 449
             C+ I+W F
Sbjct: 461 FECIAISWAF 470


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 386 TIAGEIFPLEYRSLSSGISAVFCSINIFVSIKTLP----YLFKTIGMHGA--YCLYGVIL 439
           T A + +P   R       A+ C ++  + +  +     Y+F+ +  +    +CL  ++ 
Sbjct: 454 TAAVDEWPRLLRKRKELFIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMF 513

Query: 440 VYCLTIAWFF 449
             C+ I+W F
Sbjct: 514 FECIAISWAF 523


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.141    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,033
Number of Sequences: 429
Number of extensions: 5214
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 491
length of database: 140,377
effective HSP length: 60
effective length of query: 431
effective length of database: 114,637
effective search space: 49408547
effective search space used: 49408547
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 46 (22.6 bits)