GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004510-TA|BGIBMGA004510-PA|IPR007114|Major facilitator
superfamily, IPR005828|General substrate transporter
         (476 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    28   0.15 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    28   0.15 

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 28.3 bits (60), Expect = 0.15
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 396 YCVLFCSILYSIYMFTNIKTAPYLFSLIG--IEGAFCVYAILLFYCLAVT 443
           +  + C + Y I +F   +   Y+F L+       FC+  ++ F C+A++
Sbjct: 418 FIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECIAIS 467


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 28.3 bits (60), Expect = 0.15
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 396 YCVLFCSILYSIYMFTNIKTAPYLFSLIG--IEGAFCVYAILLFYCLAVT 443
           +  + C + Y I +F   +   Y+F L+       FC+  ++ F C+A++
Sbjct: 471 FIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECIAIS 520


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.329    0.143    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,023
Number of Sequences: 429
Number of extensions: 4494
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 2
length of query: 476
length of database: 140,377
effective HSP length: 60
effective length of query: 416
effective length of database: 114,637
effective search space: 47688992
effective search space used: 47688992
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 45 (22.2 bits)