GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004505-TA|BGIBMGA004505-PA|IPR003347|Transcription
factor jumonji/aspartyl beta-hydroxylase
         (445 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   2.2  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    23   3.9  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    23   3.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   6.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   6.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   9.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   9.0  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 245 LATLENKRSNFITYIQKQNSNLT 267
           ++ L NKR+N   Y    NSNLT
Sbjct: 518 ISKLVNKRNNAKIYTSSVNSNLT 540


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 232 VMPCEEEMTMSEFLAT 247
           +MPC +E+ +SE +AT
Sbjct: 37  IMPCADELHISEDIAT 52


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 232 VMPCEEEMTMSEFLAT 247
           +MPC +E+ +SE +AT
Sbjct: 37  IMPCADELHISEDIAT 52


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 120 GVDQFFDLNMLPGPRAQSALSISEYSNQKP 149
           GVD F+   + P P       IS Y++  P
Sbjct: 65  GVDMFWLSPIYPSPMVDFGYDISNYTDVHP 94


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 120 GVDQFFDLNMLPGPRAQSALSISEYSNQKP 149
           GVD F+   + P P       IS Y++  P
Sbjct: 65  GVDMFWLSPIYPSPMVDFGYDISNYTDVHP 94


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 204 IPEKKVTVSITPNGLADGIT---SQSGVEY--FVMP-CEEEM 239
           IPE+K  V I P+G+ + +T   S+  +E   F+ P C+ EM
Sbjct: 322 IPEEKRMVIILPDGIRNYLTKFVSEYWMETRGFLQPVCQNEM 363


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 8/28 (28%), Positives = 20/28 (71%)

Query: 79  QLRILDTVIIHTKAKTFLENFDKIIRLR 106
           Q++ +  V  HT +++F+++++  +RLR
Sbjct: 353 QMKNVTIVDHHTASESFMKHYENEMRLR 380


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,064
Number of Sequences: 429
Number of extensions: 6200
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 7
length of query: 445
length of database: 140,377
effective HSP length: 60
effective length of query: 385
effective length of database: 114,637
effective search space: 44135245
effective search space used: 44135245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)