GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004503-TA|BGIBMGA004503-PA|IPR011011|Zinc finger,
FYVE/PHD-type
         (284 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   0.76 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.4  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 6/31 (19%), Positives = 19/31 (61%)

Query: 9  HWKLGDVALARMCRKVYTRVKVIKDHKGLFY 39
          H +     +  +C++VY+ +  +++HK +++
Sbjct: 26 HTRPSKEPICNICKRVYSSLNSLRNHKSIYH 56


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/31 (22%), Positives = 19/31 (61%)

Query: 9   HWKLGDVALARMCRKVYTRVKVIKDHKGLFY 39
           H++  + A+  +C KV+  +  + +HK +++
Sbjct: 395 HFQPLNSAVCALCHKVFRTLNSLNNHKSIYH 425


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 10  WKLGDVALARMCRKVYTRVKVI 31
           WK   + + RMC  ++T   +I
Sbjct: 519 WKFAAMVIDRMCLIIFTLFTII 540


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,815
Number of Sequences: 429
Number of extensions: 3819
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 284
length of database: 140,377
effective HSP length: 57
effective length of query: 227
effective length of database: 115,924
effective search space: 26314748
effective search space used: 26314748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)