GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004501-TA|BGIBMGA004501-PA|IPR001232|SKP1 component
         (134 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L34587-1|AAA67650.1|  112|Homo sapiens RNA polymerase II elongat...   224   7e-59
BC100283-1|AAI00284.1|  112|Homo sapiens transcription elongatio...   224   7e-59
BC100028-1|AAI00029.1|  112|Homo sapiens TCEB1 protein protein.       224   7e-59
BC093065-1|AAH93065.1|  112|Homo sapiens TCEB1 protein protein.       224   7e-59
BC013809-1|AAH13809.1|  112|Homo sapiens transcription elongatio...   224   7e-59
AC005756-1|AAC62260.1|  120|Homo sapiens fos39347_1 protein.          130   2e-30
Z47087-1|CAA87392.1|  163|Homo sapiens RNA polymerase II elongat...    36   0.033
U33760-1|AAC50241.1|  163|Homo sapiens cyclin A/CDK2-associated ...    36   0.033
BC065730-1|AAH65730.1|  163|Homo sapiens S-phase kinase-associat...    36   0.033
BC025673-1|AAH25673.1|  160|Homo sapiens S-phase kinase-associat...    36   0.033
BC020798-1|AAH20798.1|  163|Homo sapiens S-phase kinase-associat...    36   0.033
BC009839-1|AAH09839.1|  163|Homo sapiens S-phase kinase-associat...    36   0.033

>L34587-1|AAA67650.1|  112|Homo sapiens RNA polymerase II elongation
           factor SIII, p15 subunit protein.
          Length = 112

 Score =  224 bits (548), Expect = 7e-59
 Identities = 103/109 (94%), Positives = 105/109 (96%)

Query: 26  EEKVYGGCEGPDAMYVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFR 85
           EEK YGGCEGPDAMYVKL+SSDGHEFIVKREHAL SGTIKAMLSGPGQFAENE NEVNFR
Sbjct: 4   EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query: 86  EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLDC 134
           EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAPEIALE+LMAANFLDC
Sbjct: 64  EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112


>BC100283-1|AAI00284.1|  112|Homo sapiens transcription elongation
           factor B (SIII), polypeptide 1 (15kDa, elongin C)
           protein.
          Length = 112

 Score =  224 bits (548), Expect = 7e-59
 Identities = 103/109 (94%), Positives = 105/109 (96%)

Query: 26  EEKVYGGCEGPDAMYVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFR 85
           EEK YGGCEGPDAMYVKL+SSDGHEFIVKREHAL SGTIKAMLSGPGQFAENE NEVNFR
Sbjct: 4   EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query: 86  EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLDC 134
           EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAPEIALE+LMAANFLDC
Sbjct: 64  EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112


>BC100028-1|AAI00029.1|  112|Homo sapiens TCEB1 protein protein.
          Length = 112

 Score =  224 bits (548), Expect = 7e-59
 Identities = 103/109 (94%), Positives = 105/109 (96%)

Query: 26  EEKVYGGCEGPDAMYVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFR 85
           EEK YGGCEGPDAMYVKL+SSDGHEFIVKREHAL SGTIKAMLSGPGQFAENE NEVNFR
Sbjct: 4   EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query: 86  EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLDC 134
           EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAPEIALE+LMAANFLDC
Sbjct: 64  EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112


>BC093065-1|AAH93065.1|  112|Homo sapiens TCEB1 protein protein.
          Length = 112

 Score =  224 bits (548), Expect = 7e-59
 Identities = 103/109 (94%), Positives = 105/109 (96%)

Query: 26  EEKVYGGCEGPDAMYVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFR 85
           EEK YGGCEGPDAMYVKL+SSDGHEFIVKREHAL SGTIKAMLSGPGQFAENE NEVNFR
Sbjct: 4   EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query: 86  EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLDC 134
           EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAPEIALE+LMAANFLDC
Sbjct: 64  EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112


>BC013809-1|AAH13809.1|  112|Homo sapiens transcription elongation
           factor B (SIII), polypeptide 1 (15kDa, elongin C)
           protein.
          Length = 112

 Score =  224 bits (548), Expect = 7e-59
 Identities = 103/109 (94%), Positives = 105/109 (96%)

Query: 26  EEKVYGGCEGPDAMYVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFR 85
           EEK YGGCEGPDAMYVKL+SSDGHEFIVKREHAL SGTIKAMLSGPGQFAENE NEVNFR
Sbjct: 4   EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63

Query: 86  EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLDC 134
           EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAPEIALE+LMAANFLDC
Sbjct: 64  EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112


>AC005756-1|AAC62260.1|  120|Homo sapiens fos39347_1 protein.
          Length = 120

 Score =  130 bits (313), Expect = 2e-30
 Identities = 71/111 (63%), Positives = 79/111 (71%), Gaps = 7/111 (6%)

Query: 26  EEKVYGGCEGPDAMYVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFR 85
           EEK   G  GPDAM  KLVSSD  +FIVKREH   SG  KA+LSGPGQ AENE ++VNFR
Sbjct: 4   EEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVNFR 63

Query: 86  EIPSHVL---QKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLD 133
           EIP        K C+YFTYKV Y+NSSTEIPEF      ALEVLMA++FLD
Sbjct: 64  EIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF----LTALEVLMASDFLD 110


>Z47087-1|CAA87392.1|  163|Homo sapiens RNA polymerase II elongation
           factor-like protein protein.
          Length = 163

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 41  VKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFREIPSHVLQKVCMYFT 100
           +KL SSDG  F V  E A  S TIK ML   G   E + + V    + + +L+KV  + T
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63

Query: 101 Y 101
           +
Sbjct: 64  H 64


>U33760-1|AAC50241.1|  163|Homo sapiens cyclin A/CDK2-associated p19
           protein.
          Length = 163

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 41  VKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFREIPSHVLQKVCMYFT 100
           +KL SSDG  F V  E A  S TIK ML   G   E + + V    + + +L+KV  + T
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63

Query: 101 Y 101
           +
Sbjct: 64  H 64


>BC065730-1|AAH65730.1|  163|Homo sapiens S-phase kinase-associated
           protein 1A (p19A) protein.
          Length = 163

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 41  VKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFREIPSHVLQKVCMYFT 100
           +KL SSDG  F V  E A  S TIK ML   G   E + + V    + + +L+KV  + T
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63

Query: 101 Y 101
           +
Sbjct: 64  H 64


>BC025673-1|AAH25673.1|  160|Homo sapiens S-phase kinase-associated
           protein 1A (p19A) protein.
          Length = 160

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 41  VKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFREIPSHVLQKVCMYFT 100
           +KL SSDG  F V  E A  S TIK ML   G   E + + V    + + +L+KV  + T
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63

Query: 101 Y 101
           +
Sbjct: 64  H 64


>BC020798-1|AAH20798.1|  163|Homo sapiens S-phase kinase-associated
           protein 1A (p19A) protein.
          Length = 163

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 41  VKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFREIPSHVLQKVCMYFT 100
           +KL SSDG  F V  E A  S TIK ML   G   E + + V    + + +L+KV  + T
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63

Query: 101 Y 101
           +
Sbjct: 64  H 64


>BC009839-1|AAH09839.1|  163|Homo sapiens S-phase kinase-associated
           protein 1A (p19A) protein.
          Length = 163

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 41  VKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFREIPSHVLQKVCMYFT 100
           +KL SSDG  F V  E A  S TIK ML   G   E + + V    + + +L+KV  + T
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63

Query: 101 Y 101
           +
Sbjct: 64  H 64


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.316    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,335,875
Number of Sequences: 224733
Number of extensions: 561095
Number of successful extensions: 832
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 818
Number of HSP's gapped (non-prelim): 12
length of query: 134
length of database: 73,234,838
effective HSP length: 82
effective length of query: 52
effective length of database: 54,806,732
effective search space: 2849950064
effective search space used: 2849950064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)