GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004498-TA|BGIBMGA004498-PA|IPR005349|Protein of unknown
function UPF0136, Transmembrane
         (72 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    19   4.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    19   6.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    19   6.0  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
          protein.
          Length = 484

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 43 VGAYQLSQDPSNY 55
          V AY L+Q+ SN+
Sbjct: 21 VSAYNLNQEDSNW 33


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.0 bits (37), Expect = 6.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 35  IIFGSILGVGAY 46
           ++F  I+G GAY
Sbjct: 412 LLFSGIVGFGAY 423


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.0 bits (37), Expect = 6.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 35  IIFGSILGVGAY 46
           ++F  I+G GAY
Sbjct: 412 LLFSGIVGFGAY 423


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.141    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,355
Number of Sequences: 429
Number of extensions: 429
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 72
length of database: 140,377
effective HSP length: 46
effective length of query: 26
effective length of database: 120,643
effective search space:  3136718
effective search space used:  3136718
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.5 bits)
S2: 36 (18.6 bits)