GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004496-TA|BGIBMGA004496-PA|IPR013026|Tetratricopeptide
region
         (372 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           24   1.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    24   2.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           24   2.4  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   3.2  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   5.6  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   5.6  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   5.6  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   7.4  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   7.4  

>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 68  LKFDPEENTPVELASNYKEDGNFNFKHKNYRLAILGY 104
           L F     TP  + + Y  D +  F   NYRL ILG+
Sbjct: 2   LAFQLGSGTP--MGAKYLMDSDVIFVTINYRLGILGF 36


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 78  VELASNYKEDGNFNFKHKNYRLAILGY 104
           + + + Y  D +  F   NYRL ILG+
Sbjct: 139 IPMGAKYLMDSDVIFVTINYRLGILGF 165


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 78  VELASNYKEDGNFNFKHKNYRLAILGY 104
           + + + Y  D +  F   NYRL ILG+
Sbjct: 139 IPMGAKYLMDSDVIFVTINYRLGILGF 165


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 186 KDISELLSNAKKKKIIMERDQRKQARNIQNITEQKDAVLKAIIERGIKIS 235
           +D+  +    +  K + ER++ K      N  E++D VL   IE+  K S
Sbjct: 158 EDVIVIRRTGEGSKPLFEREEIKNVLTKINKIEEQDTVLVVNIEKSGKES 207


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 186 KDISELLSNAKKKKIIMERDQRKQARNIQNITEQKDAVLKAIIERGIKIS 235
           +D+  +    +  K + ER++ K      N  E+ D VL   IE+  K S
Sbjct: 147 EDVIVIRRTGEGSKPLFEREEIKNVLTKINKIEEHDTVLVVNIEKSGKES 196


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 186 KDISELLSNAKKKKIIMERDQRKQARNIQNITEQKDAVLKAIIERGIKIS 235
           +D+  +    +  K + ER++ K      N  E+ D VL   IE+  K S
Sbjct: 158 EDVIVIRRTGEGSKPLFEREEIKNVLTKINKIEEHDTVLVVNIEKSGKES 207


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 186 KDISELLSNAKKKKIIMERDQRKQARNIQNITEQKDAVLKAIIERGIKIS 235
           +D+  +    +  K + ER++ K      N  E+ D VL   IE+  K S
Sbjct: 147 EDVIVIRRTGEGSKPLFEREEIKNVLTKINKIEEHDTVLVVNIEKSGKES 196


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 11  QKLDKELDDFIDS-LEKRRYTEGWP-EDRWEEEMDKHPFFMKSTPENGELSPLAEGLANL 68
           +KL  E + F++    ++RY+     E +  +   ++  + +++ E        E     
Sbjct: 20  EKLHNEKEKFLEERTSRKRYSRSREREQKLYKNKREYRKYRETSKERSRNRTERERSKEP 79

Query: 69  KFDPEENTPVELASNYKEDGNFNFKHKNY 97
           K     N+   L++NY  + N+N  + NY
Sbjct: 80  KIISNNNS---LSNNYNYNNNYNNYNNNY 105


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 186 KDISELLSNAKKKKIIMERDQRKQARNIQNITEQKDAVLKAIIER 230
           +D+  +    +  K I ER++ K      N  E+ D VL   IE+
Sbjct: 158 EDVILIRRTGEGSKPIFEREEIKNVLTKINKIEEHDTVLVVNIEK 202


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,922
Number of Sequences: 429
Number of extensions: 5574
Number of successful extensions: 26
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 9
length of query: 372
length of database: 140,377
effective HSP length: 59
effective length of query: 313
effective length of database: 115,066
effective search space: 36015658
effective search space used: 36015658
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)