GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004494-TA|BGIBMGA004494-PA|IPR009622|Protein of unknown
function UPF0240
         (215 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    29   0.044
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   2.9  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   2.9  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.7  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   8.8  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   8.8  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   8.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 28.7 bits (61), Expect = 0.044
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 5/45 (11%)

Query: 44   KRTLEADPNIDEKLDKKD-----PALDDRLKDVYVTSYGRSEDDV 83
            K+ ++    ++E LDK D     P +D   KDV ++ +G S +D+
Sbjct: 1379 KKKIDVRAKLNEYLDKADVIVNTPIMDAHFKDVKLSDFGFSTEDI 1423


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 35  RYPGNIEDLKRTLEADPNIDEKLDKKDPALDDRLKDVYVTSY 76
           R P   + ++     +  +DE   K     D R KDVY+  Y
Sbjct: 109 RAPMGFQGMRGKKSLEEILDEIKKKTTRFQDSRSKDVYLIDY 150


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 35  RYPGNIEDLKRTLEADPNIDEKLDKKDPALDDRLKDVYVTSY 76
           R P   + ++     +  +DE   K     D R KDVY+  Y
Sbjct: 109 RAPMGFQGMRGKKSLEEILDEIKKKTTRFQDSRSKDVYLIDY 150


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 35  RYPGNIEDLKRTLEADPNIDEKLDKKDPALDDRLKDVYVTSY 76
           R P   + ++     +  +DE   K     D R KDVY+  Y
Sbjct: 109 RAPMGFQGMRGKKSLEEILDEIKKKTTRFQDSRSKDVYLIDY 150


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 7   KALRPVKAFNIENRAHRVISKEKPTPA 33
           K L P+K+  I+      ISK+K +PA
Sbjct: 251 KMLTPIKSEPIDAYEMHQISKKKLSPA 277


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 64  LDDRLKDVYVTSYGRSEDDVTRELRKKQSEVRP 96
           +D  +  +  T+Y    DD +  +R +  +VRP
Sbjct: 86  IDGHVVTINETTYTDGSDDYSTLIRVRVIDVRP 118


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 64  LDDRLKDVYVTSYGRSEDDVTRELRKKQSEVRP 96
           +D  +  +  T+Y    DD +  +R +  +VRP
Sbjct: 134 IDGHVVTINETTYTDGSDDYSTLIRVRVIDVRP 166


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 64  LDDRLKDVYVTSYGRSEDDVTRELRKKQSEVRP 96
           +D  +  +  T+Y    DD +  +R +  +VRP
Sbjct: 134 IDGHVVTINETTYTDGSDDYSTLIRVRVIDVRP 166


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 99  QDRKLVEDFEFGFRE 113
           + RK++E F FGF +
Sbjct: 942 ETRKILEPFGFGFEQ 956


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.133    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,062
Number of Sequences: 429
Number of extensions: 3030
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 215
length of database: 140,377
effective HSP length: 55
effective length of query: 160
effective length of database: 116,782
effective search space: 18685120
effective search space used: 18685120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 42 (21.0 bits)