GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004493-TA|BGIBMGA004493-PA|undefined
         (249 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    26   0.28 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.0  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 125 YRQFQDAAQFDSPYTISLMDCMQAIKKARDLGFFNFQDFDCGEYDRLNSIQGGDLNWIV 183
           Y + +DA Q DS   +   +     K+  ++G  ++   +CG+Y   N+  G  ++WIV
Sbjct: 338 YAKGKDACQMDSGGPVLWQN--PRTKRLVNIGIISW-GAECGKYPNGNTKVGSYIDWIV 393


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/26 (23%), Positives = 15/26 (57%)

Query: 13  YVKNVLYFVIVRNGKILREASDAHYF 38
           +++  +  +++ NG++    SD  YF
Sbjct: 495 FIQEGIVDIVMANGEVATSLSDGSYF 520


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/26 (23%), Positives = 15/26 (57%)

Query: 13  YVKNVLYFVIVRNGKILREASDAHYF 38
           +++  +  +++ NG++    SD  YF
Sbjct: 463 FIQEGIVDIVMANGEVATSLSDGSYF 488


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,390
Number of Sequences: 429
Number of extensions: 3128
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 249
length of database: 140,377
effective HSP length: 56
effective length of query: 193
effective length of database: 116,353
effective search space: 22456129
effective search space used: 22456129
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)