GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004492-TA|BGIBMGA004492-PA|undefined
         (126 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   0.60 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   3.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   7.3  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 0.60
 Identities = 12/48 (25%), Positives = 26/48 (54%)

Query: 37  GCTLIEVVPQIKDAYVKQIHKRTKSLAKTQLEYFRMDGSEDSRKMAKK 84
           GCT+      ++ A+V  I++R K++   ++    +  S  + K+A+K
Sbjct: 300 GCTIFLFAAMVEFAFVNTIYRRKKTVPLKKVNSKYILKSTLTPKLARK 347


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 26  LHNRTNGVKNPGCTLIEVVPQI 47
           + NR   +   GCT+  V+PQ+
Sbjct: 220 MFNRDLIIVQTGCTITRVIPQV 241


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 26  LHNRTNGVKNPGCTLIEVVPQI 47
           + NR   +   GCT+  V+PQ+
Sbjct: 220 MFNRDLIIVQTGCTITRVIPQV 241


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 32  GVKNPGCTLIE 42
           G+  PGCT+IE
Sbjct: 93  GLLKPGCTIIE 103


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 10/33 (30%), Positives = 12/33 (36%)

Query: 60  KSLAKTQLEYFRMDGSEDSRKMAKKLLDSYASD 92
           KS  +  +EYF  D      K      D Y  D
Sbjct: 142 KSFCEIDVEYFPFDEQTCFMKFGSWTYDGYTVD 174


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,578
Number of Sequences: 429
Number of extensions: 1039
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 126
length of database: 140,377
effective HSP length: 51
effective length of query: 75
effective length of database: 118,498
effective search space:  8887350
effective search space used:  8887350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)