GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004491-TA|BGIBMGA004491-PA|IPR013854|Transcription
factor AP-2, C-terminal, IPR004979|Transcription factor AP-2
         (90 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.1  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    19   7.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    19   7.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   9.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            19   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 54  IQNFLNESLKHLDKL 68
           I NF N S ++LD+L
Sbjct: 466 ISNFYNGSFRNLDQL 480



 Score = 20.6 bits (41), Expect = 3.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 54  IQNFLNESLKHLDKLYPQSGMV 75
           ++ F  E L HL +LY Q+ ++
Sbjct: 857 LKGFEFERLSHLRELYLQNNLI 878


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 66   DKLYPQSGMVSSSMDKTKMD 85
            D +Y Q+G+  +++DK + D
Sbjct: 1619 DVVYQQTGVGGATLDKRRPD 1638


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 35  FSLISHGFGGPAIVAALTAIQNFL 58
           FS I  G GG  ++     I+N L
Sbjct: 277 FSNILRGTGGALVLVLYDEIKNLL 300


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 35  FSLISHGFGGPAIVAALTAIQNFL 58
           FS I  G GG  ++     I+N L
Sbjct: 277 FSNILRGTGGALVLVLYDEIKNLL 300


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 53  AIQNFLNESLKHLDKLYPQSGMVSSSMD 80
           +++ F    L HL  L P+   +SSS D
Sbjct: 879 SVRPFAPLLLLHLTPLQPRFYSISSSPD 906


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)

Query: 37  LISHGFGGPAIVAA 50
           ++SH FG P I+++
Sbjct: 333 MLSHPFGTPRIMSS 346


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,534
Number of Sequences: 429
Number of extensions: 775
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 90
length of database: 140,377
effective HSP length: 48
effective length of query: 42
effective length of database: 119,785
effective search space:  5030970
effective search space used:  5030970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
S2: 37 (19.0 bits)