GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004490-TA|BGIBMGA004490-PA|undefined
         (153 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.34 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   1.0  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   1.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   3.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   4.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   4.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.6  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 25.0 bits (52), Expect = 0.34
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 81  MIIDKESSKTIRLELRQPGDGGTSDIDVQAVENLDPNN 118
           +IID ++ K +R+   +  D  +    V  V ++DPNN
Sbjct: 146 IIIDLKTDKILRIYPLKSSDQTSDSFFVDLVIDVDPNN 183



 Score = 21.0 bits (42), Expect = 5.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 117 NNYTVKTDSRLNTGNEKNVDYNMNGCENENRAVNPKP 153
           N+    T  R   G   N+++ +   E+E+  +NP P
Sbjct: 60  NDKVFITIPRWKNGVPSNLNFFLKNDESESPKLNPYP 96


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 84  DKESSKTIRLELRQPGD-GGTSDIDVQAVENLDPNNYTVKTDSRLNTGNEKNVDYNMNGC 142
           ++   +T R   R+P      S+  +    N + NNY     +  N  N K + YN+N  
Sbjct: 65  ERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYI 124

Query: 143 E 143
           E
Sbjct: 125 E 125


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 117 NNYTVKTDSRLNTGNEKNVDYNMNGCE 143
           +N T+  ++  N  N K + YN+N  E
Sbjct: 308 SNKTIHNNNNYNNYNNKKLYYNINYIE 334


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 118 NYTVKTDSRLNTGNEKNVDYNMNGCENENRAVN 150
           N  ++  +  N  N+KN   N N  +N N+  N
Sbjct: 420 NDNIQNTNNQNDNNQKNNKKNANNQKNNNQNDN 452



 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 111 VENLDPNNYTVKTDSRLNTGNEKNVDYNMN 140
           ++N +  N   + +++ N  N+KN + N N
Sbjct: 423 IQNTNNQNDNNQKNNKKNANNQKNNNQNDN 452


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 61  AKTKSYDDTEYDIDKIVQANMIIDKESSKTIRLELRQP 98
           A  K  +  +Y I ++++  M  DK  SK++  +  QP
Sbjct: 772 APFKGMETQDYRIPEVMRRLMSEDKRLSKSVNGDQSQP 809


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 15  SVDDIFSENYNAKRKRIQLESFDGKHLTKIDSGIEKSDEPP-REDLKAKTKSYDDTEYDI 73
           S DD F+   +   KRI L      H T   +G ++ +E      +    +SYD  +YD+
Sbjct: 64  SEDDSFNNQADKSEKRIPLYVCRVLHTTVWVAGAQRGNEQRCTVTMHGTVQSYD--KYDL 121


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 78  QANMIIDKESSKTIRLELRQPGDGGTSDIDVQAVENL 114
           + N  +DK  ++  R +LR   + G   I V++ E +
Sbjct: 382 EENESVDKHPNRRARGQLRTKIESGEGTIPVKSSEGI 418


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 86  ESSKTIRLELRQPGDGGTSD 105
           E    + ++L++P DG TS+
Sbjct: 297 EQPVQVYIQLKRPSDGATSE 316


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 86  ESSKTIRLELRQPGDGGTSD 105
           E    + ++L++P DG TS+
Sbjct: 297 EQPVQVYIQLKRPSDGATSE 316


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 113 NLDPNNYTVKTDSRLNTGNEKNVDYNMNGCENEN 146
           N + +N     ++  N  N  N + N NG  N N
Sbjct: 234 NTNASNNNNNNNNNNNNNNGANDNGNGNGASNNN 267


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 44  IDSGIEKSDEPPREDLKAKTKSYDDTEYDIDKIVQ 78
           I+SG EK D+P      +   S   +    DK V+
Sbjct: 582 IESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVE 616


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,307
Number of Sequences: 429
Number of extensions: 2189
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 153
length of database: 140,377
effective HSP length: 53
effective length of query: 100
effective length of database: 117,640
effective search space: 11764000
effective search space used: 11764000
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.7 bits)
S2: 40 (20.2 bits)