GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004489-TA|BGIBMGA004489-PA|IPR001753|Enoyl-CoA
hydratase/isomerase
         (330 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    26   0.52 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   1.2  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   1.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   1.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   2.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.4  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 257 PNSEESMRDEAVMTSLLGNAILDIEEGVKKFQGGIGKHGK 296
           P   + +++    TS    A+L +  G+ +F+ GI K+G+
Sbjct: 93  PGHRDFIKNMITGTSQADCAVLIVAAGIGEFEAGISKNGQ 132


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 257 PNSEESMRDEAVMTSLLGNAILDIEEGVKKFQGGIGKHGK 296
           P   + +++    TS    A+L +  G  +F+ GI K+G+
Sbjct: 20  PGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 59


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 257 PNSEESMRDEAVMTSLLGNAILDIEEGVKKFQGGIGKHGK 296
           P   + +++    TS    A+L +  G  +F+ GI K+G+
Sbjct: 36  PGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 75


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 257 PNSEESMRDEAVMTSLLGNAILDIEEGVKKFQGGIGKHGK 296
           P   + +++    TS    A+L +  G  +F+ GI K+G+
Sbjct: 93  PGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 132


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 215 ACKLTSTGTGLGESVKLAK-SLAKFPQNALIMDKLAAVNSQLNPNS 259
           A + TST T +  S +  + ++A    N L+ +KLAA +SQ +P S
Sbjct: 87  ASQPTSTTTSVTPSCRRQRYNIAA--ANPLLAEKLAAPSSQASPTS 130


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 74  LREMAAAIDDFEKDNQAKVLVLNGEGGSFCSGFDIDEIGEKGYNSLKDA 122
           L    A +D    D  AK++    E  +     DID    + Y SL+ A
Sbjct: 540 LLTQVAELDQIYADTHAKLVQAAFEQNTTDQSMDIDVCDNQTYTSLQMA 588


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,116
Number of Sequences: 429
Number of extensions: 2172
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 330
length of database: 140,377
effective HSP length: 58
effective length of query: 272
effective length of database: 115,495
effective search space: 31414640
effective search space used: 31414640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)