GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004488-TA|BGIBMGA004488-PA|IPR008011|Complex 1 LYR
protein
         (144 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   0.55 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   1.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   1.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.1  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.2 bits (50), Expect = 0.55
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 109 KAQYPEYFKKREQRKKEFVAMWEKEYGKPDEKDK 142
           K+ Y     K EQ++KE   M E+E  + +  D+
Sbjct: 52  KSIYHRQHSKNEQQRKEMEQMREREREQREHSDR 85


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 76  PIPKYFATSPGGVAHERVVTPPDWV 100
           P   Y+   PG + + + V P +WV
Sbjct: 141 PYNNYYIWHPGKIVNGKRVPPTNWV 165


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 76  PIPKYFATSPGGVAHERVVTPPDWV 100
           P   Y+   PG + + + V P +WV
Sbjct: 141 PYNNYYIWHPGKIVNGKRVPPTNWV 165


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 19  YKRALRNLEAYY-DRRHVYRYQAVLLRERFDKHAKETNM 56
           YKR     E    D RH  RY+     E ++   KET++
Sbjct: 159 YKRPRTTFEPRATDSRHYDRYKEEESNENYNWEHKETHI 197


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,768
Number of Sequences: 429
Number of extensions: 1760
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 144
length of database: 140,377
effective HSP length: 52
effective length of query: 92
effective length of database: 118,069
effective search space: 10862348
effective search space used: 10862348
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)