GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004487-TA|BGIBMGA004487-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (313 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    42   7e-06
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   3.4  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   3.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 41.9 bits (94), Expect = 7e-06
 Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 29/221 (13%)

Query: 42  YPYMAAV--IINGRLWCAGAIVDVNWVVTAAHCLNYVLQVSALKSLKNYVKLRVGSALPH 99
           +P MA +       + C   I+   +V+TAAHC   ++  +  K      +    S    
Sbjct: 172 FPMMAGIKRTYEPGMICGATIISKRYVLTAAHC---IIDENTTKLAIVVGEHDWSSKTET 228

Query: 100 XXXXXXXXXXXXRHPKF---EEEPVPHADVALLKLSTNLEFTPHVSLIKI-YEGTKEPYA 155
                        HPK+   E++     D+ALLK   +++F   V    + ++   + +A
Sbjct: 229 NATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFA 288

Query: 156 QSFVTVSGWGAVKGTDTAFREHTPSLLS-ARLKIRSHRYCVDAFQLVSGLQITRDFFCAS 214
            S VTV GWG      T+F      +L    L + +    V+ ++    + +     CA 
Sbjct: 289 GSDVTVLGWG-----HTSFNGMLSHILQKTTLNMLTQ---VECYKYYGNIMVNA--MCAY 338

Query: 215 LRNGTRDACLFDAGAPAVQKNKL------MGIMSFGPENCG 249
            +   +DAC  D+G P + +N        +GI+S+G E CG
Sbjct: 339 AKG--KDACQMDSGGPVLWQNPRTKRLVNIGIISWGAE-CG 376


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 218 GTRDACLFDAGAPAVQKNKLMGIMSFGPENCGD 250
           G +D    +   P  +KN  +GI+      C D
Sbjct: 73  GPKDLVYLEPSPPFCEKNPKLGILGTHGRQCND 105


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 218 GTRDACLFDAGAPAVQKNKLMGIMSFGPENCGD 250
           G +D    +   P  +KN  +GI+      C D
Sbjct: 74  GPKDLVYLEPSPPFCEKNPKLGILGTHGRQCND 106


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,487
Number of Sequences: 429
Number of extensions: 2825
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 313
length of database: 140,377
effective HSP length: 58
effective length of query: 255
effective length of database: 115,495
effective search space: 29451225
effective search space used: 29451225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)