GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004486-TA|BGIBMGA004486-PA|IPR007114|Major facilitator
superfamily, IPR011701|Major facilitator superfamily MFS_1
         (398 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   2.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   4.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.0  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 319 SVDALSDFVQTKAYDPLLKLLGIHW--VFIIFSSVCFFGAFYTIMW 362
           SV+AL D   T  YD + +L  +H+   FI  S +     F  I++
Sbjct: 490 SVEALLDIFDTYTYDTICQLNIVHYGIGFITQSDIELANTFKAIIY 535


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 8/24 (33%), Positives = 18/24 (75%)

Query: 245 LLASTALVTGMSMLALGLWFYITS 268
           + +S  ++ G+++L L L++Y+TS
Sbjct: 1   MASSFEILCGIAVLFLALYYYLTS 24


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 197 YAGSIFEQASESISLKLSPNKQTILVGAIQLLGSIVASCIVE 238
           Y G+ F    E  +  L P+     +GA+  +G+ VA C  E
Sbjct: 432 YYGNRFSGEYEIPAHGLPPSATRYDLGAVATVGTTVAPCFEE 473


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 230 SIVASCIVEQTGRKWLLASTALVTGMSMLALGLWFYITSLSIWLPGWLPVAAM 282
           S+ +S ++  T    LLA     T +++  LG +   T + + L  W+ V  +
Sbjct: 282 SLCSSILLSLTVFFLLLAEIIPPTSLAIPLLGKYLLFTMILVTLSIWITVCVL 334


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.135    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,656
Number of Sequences: 429
Number of extensions: 3608
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 398
length of database: 140,377
effective HSP length: 59
effective length of query: 339
effective length of database: 115,066
effective search space: 39007374
effective search space used: 39007374
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)