GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004484-TA|BGIBMGA004484-PA|undefined
         (138 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   0.90 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   8.4  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 0.90
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 91  FFGVVSFGACIYTMVRFPETRQKTVAEIYSKLSGNDEEKDENKTE 135
           +F ++SFG CI T++ F      T  ++ S     +EE+ EN+ E
Sbjct: 309 WFLLMSFGYCIATLLEFAGVHYFT--KVGSGEIPLEEEEWENENE 351


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 88  TFLFFGVVSFGA 99
           T LF G+V FGA
Sbjct: 411 TLLFSGIVGFGA 422


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 88  TFLFFGVVSFGA 99
           T LF G+V FGA
Sbjct: 411 TLLFSGIVGFGA 422


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 67  ISNFIQMKWFTDICNLVGI 85
           + N I + W T + +L+GI
Sbjct: 85  LQNIIDICWITMVYSLLGI 103


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.329    0.140    0.466 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,234
Number of Sequences: 429
Number of extensions: 1422
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 138
length of database: 140,377
effective HSP length: 52
effective length of query: 86
effective length of database: 118,069
effective search space: 10153934
effective search space used: 10153934
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 40 (20.2 bits)