GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004482-TA|BGIBMGA004482-PA|IPR005835|Nucleotidyl
transferase, IPR001451|Bacterial transferase hexapeptide repeat
         (392 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   4.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   5.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   5.9  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 55  IIGSYTTTQMTQFVNDMQKLYRVIIRYLQEFTPLGTG 91
           ++G Y T      +ND + +  ++IR   +F   G G
Sbjct: 72  MVGLYATRSPFLLLNDPELIKDILIRDFSKFANRGLG 108


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 360 NRPLFNTDGRLNPSITILGKPLYIVYT 386
           N  L +  G  NP  TI+G P  I +T
Sbjct: 187 NHQLISYAGYKNPDGTIIGDPANIEFT 213


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 302 IKAGVRIKESIILENATVNEHSLIMYSVVGREASVG 337
           + AG+   E+ I +N    EH+L+ +++  ++  VG
Sbjct: 116 VAAGIGEFEAGISKNGQTREHALLAFTLGVKQLIVG 151


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 156 VRNGSNAVTHYVEKPNSYVSTLIN 179
           V  GS+   H  E+PN  V+T  N
Sbjct: 307 VSTGSDKENHKTEEPNDEVATYDN 330


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,987
Number of Sequences: 429
Number of extensions: 5562
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 392
length of database: 140,377
effective HSP length: 59
effective length of query: 333
effective length of database: 115,066
effective search space: 38316978
effective search space used: 38316978
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)