GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004481-TA|BGIBMGA004481-PA|IPR001806|Ras GTPase,
IPR013753|Ras, IPR003577|Ras small GTPase, Ras type, IPR003579|Ras
small GTPase, Rab type
         (204 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   2.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   3.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.2  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 113 LATSRDCKFIETSSGIQHNVDE 134
           L  +  C+F  T  GI HN D+
Sbjct: 194 LQAANACRFWPTGRGIYHNDDK 215


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
          protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 30 STEMSIENCLSTYEP 44
          ST MS++N +ST EP
Sbjct: 13 STTMSVKNEISTVEP 27


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 141 KQIRLKETRDKKQAKKTSTTKEAKPTKLASS 171
           K++   E ++K  +  TSTT E   T  ASS
Sbjct: 341 KRLPWLELQEKPISDSTSTTTETVNTPPASS 371


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.128    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,892
Number of Sequences: 429
Number of extensions: 1899
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 204
length of database: 140,377
effective HSP length: 55
effective length of query: 149
effective length of database: 116,782
effective search space: 17400518
effective search space used: 17400518
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)