GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004479-TA|BGIBMGA004479-PA|undefined
         (155 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   9.9  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        20   9.9  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 91  SSVSTHRRLRAALATSRQHSAQFRLTANFE 120
           S +  H   R  +  S Q  A ++LT N E
Sbjct: 331 SDIPLHDATRDLVLMSEQFEADYKLTRNLE 360


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 91  SSVSTHRRLRAALATSRQHSAQFRLTANFE 120
           S +  H   R  +  S Q  A ++LT N E
Sbjct: 331 SDIPLHDATRDLVLMSEQFEADYKLTRNLE 360


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 103 LATSRQHSAQFRLTANFEQHWRHARSIQAQPRLTAGFEQHWH 144
           L  S   + + R+  +   H+  + + Q+  RLT+  E H H
Sbjct: 59  LVASLDGALKLRIRCSDVHHFESSFNAQSWQRLTSLHELHVH 100


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 12/50 (24%), Positives = 24/50 (48%)

Query: 20  GSSTLRVTKYQVMRIKNFGYHDPRILADKNKSSTVVPQQASIAASTGPSQ 69
           G+++  V    V+   +    +PRI +  + S++  P     AA+  PS+
Sbjct: 493 GAASTAVIHEPVVETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 56 PQQASIAASTGPSQPTHRASWSY 78
          PQ +  +AST P+  T  + + Y
Sbjct: 69 PQHSGSSASTSPAARTTSSMYPY 91


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.122    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,526
Number of Sequences: 429
Number of extensions: 1619
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 155
length of database: 140,377
effective HSP length: 53
effective length of query: 102
effective length of database: 117,640
effective search space: 11999280
effective search space used: 11999280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)