GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004476-TA|BGIBMGA004476-PA|IPR004943|Lepidopteran low
molecular weight lipoprotein
         (306 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    26   0.48 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.1  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.5  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   4.4  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   5.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.7  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
          protein precursor protein.
          Length = 153

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 7  AVLLTCMLAAAANAVPGADESTTTPSV 33
          A +L C+L   A A+ G DE   TP +
Sbjct: 9  ASVLICLLNETAKAIIGVDECQATPVI 35


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 136 PAYRMVLNDTFIKFINYQDRVSIELGPTPDFANDKRLYGNNDHPHSQ 182
           P   MV   T ++++   + +  ELG +   A D       ++PH Q
Sbjct: 40  PKPAMVEEKTQLRYLEELNALRTELGASTKLATDTTSENEENYPHYQ 86


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 18 ANAVPGADES-TTTPSVDSSINELPESLTTASAVNSTVEVSEPQLTSTN 65
          ++A PG  ++ TT+P+  S  + L  +   A+AVN   + + P  T ++
Sbjct: 20 SSANPGTIQACTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSS 68


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/33 (24%), Positives = 19/33 (57%)

Query: 168 NDKRLYGNNDHPHSQNYHWKLEPVVDGKKIYFK 200
           ++K ++ NN++ ++ N  +        KK+Y+K
Sbjct: 86  SNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYK 118


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
          protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 60 QLTSTNQMVQNLYDAIVYENYDEAVSQALNCMRYDRP 96
          QL S  Q +  LY  + Y N  + + Q   C ++  P
Sbjct: 49 QLHSCFQTMDRLYFVMEYVNGGDLMYQIQQCGKFKEP 85


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 14  LAAAANAVPGADESTTTPS 32
           L AAA   PG +E T T S
Sbjct: 414 LGAAALVAPGMEEPTNTAS 432


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,893
Number of Sequences: 429
Number of extensions: 4374
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 306
length of database: 140,377
effective HSP length: 58
effective length of query: 248
effective length of database: 115,495
effective search space: 28642760
effective search space used: 28642760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)