GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004475-TA|BGIBMGA004475-PA|IPR004943|Lepidopteran low
molecular weight lipoprotein
         (301 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF090421-1|AAC69577.1|  809|Homo sapiens ribosome S6 protein kin...    30   8.6  

>AF090421-1|AAC69577.1|  809|Homo sapiens ribosome S6 protein kinase
           protein.
          Length = 809

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 60  SNQSPSMSVVSKQLENKLYNFIVARKFDEAVENTISLYGAGGCNIIERVIERLFDEGQSI 119
           SNQ+  + ++SK++E      I A K  E   N + L+      +   ++  L + G+  
Sbjct: 448 SNQALQVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE-- 505

Query: 120 VFDYSYK---VSISRAAYIVSRCFPAVIRIHE 148
           +FD   K    S + A+YI+ +   A+  +H+
Sbjct: 506 LFDALRKKKHFSETEASYIMRKLVSALSHMHD 537


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,561,768
Number of Sequences: 224733
Number of extensions: 1440062
Number of successful extensions: 2656
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2656
Number of HSP's gapped (non-prelim): 1
length of query: 301
length of database: 73,234,838
effective HSP length: 90
effective length of query: 211
effective length of database: 53,008,868
effective search space: 11184871148
effective search space used: 11184871148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)