GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004474-TA|BGIBMGA004474-PA|IPR004943|Lepidopteran low
molecular weight lipoprotein
         (289 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   4.2  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   5.5  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   5.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.3  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   9.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 15/56 (26%), Positives = 21/56 (37%)

Query: 17  NANVIGSSTVAATISSTDSPSTEATVNIENINSTLALSDTAAKNIEDALYNEVVAR 72
           N   IGS  +    SST  P+T  T       +T   + TA       +  E + R
Sbjct: 85  NLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQR 140


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 31  SSTDSPSTEATVNIENINSTLALSDTAAKNIEDALY 66
           S + SP +    N  NI+ T+ LSD    + + +L+
Sbjct: 80  SKSRSPDSRDRSNTSNISKTVILSDKLESSDDISLF 115


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 31  SSTDSPSTEATVNIENINSTLALSDTAAKNIE 62
           S + SP +    N  N + T+ LSD   + I+
Sbjct: 80  SKSRSPDSRDKSNTSNTSKTIILSDKGPEGIQ 111


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 31  SSTDSPSTEATVNIENINSTLALSDTAAKNIE 62
           S + SP +    N  N + T+ LSD   + I+
Sbjct: 80  SKSRSPDSRDRSNTSNTSKTVILSDKGPEGIQ 111


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 31  SSTDSPSTEATVNIENINSTLALSDTAAKNIE 62
           S + SP +    N  N + T+ LSD   + I+
Sbjct: 80  SKSRSPDSRDRSNASNTSKTVILSDKGPEGIQ 111


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 31  SSTDSPSTEATVNIENINSTLALSDTAAKNIE 62
           S + SP +    N  N + T+ LSD   + I+
Sbjct: 80  SKSRSPDSRDRSNASNTSKTVILSDKGPEGIQ 111


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 140 FVKIISYKYDFALKYGLGEDFD 161
           FVK++S+  D   ++  G+D+D
Sbjct: 133 FVKVLSWHTDQGEEFVPGDDYD 154


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 95  NVVNRLIDNGKSQLID 110
           NVV +LIDN K ++ D
Sbjct: 560 NVVYKLIDNIKKEIYD 575


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 138 LFFVKIISYKYDFALKYGLGEDFDED 163
           L+ +K  S   +  +K+ LGE+F+E+
Sbjct: 49  LYTLKTTSPFKNTEIKFKLGEEFEEE 74


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,776
Number of Sequences: 429
Number of extensions: 3451
Number of successful extensions: 29
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 9
length of query: 289
length of database: 140,377
effective HSP length: 57
effective length of query: 232
effective length of database: 115,924
effective search space: 26894368
effective search space used: 26894368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)