GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004466-TA|BGIBMGA004466-PA|IPR004943|Lepidopteran low
molecular weight lipoprotein
         (64 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    19   3.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   6.1  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
          opsin protein.
          Length = 371

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 5/12 (41%), Positives = 8/12 (66%)

Query: 51 GQPEIFGWSISA 62
          G P + GW++ A
Sbjct: 16 GPPRLLGWNVPA 27


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 10  SHEDNTLFYIYSRQCNQSLKLGRAVDSDGDRRVYSNAGEVVGQPEI 55
           S  DN+L+  Y     + L+           + Y  A  ++G+P+I
Sbjct: 600 SKHDNSLYDEYIPFLERELRKAHQEKDSPRIQTYIMALGMIGEPKI 645


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,284
Number of Sequences: 429
Number of extensions: 514
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 64
length of database: 140,377
effective HSP length: 44
effective length of query: 20
effective length of database: 121,501
effective search space:  2430020
effective search space used:  2430020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)