GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004464-TA|BGIBMGA004464-PA|IPR004943|Lepidopteran low
molecular weight lipoprotein
         (262 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 19  IDLDINILSAPTRAETRLVDAITTADYNTAVSLILLLEKQSSGS 62
           +  D+   S PT   T +  +     YN A +  LL EK ++ S
Sbjct: 80  LQADLAEASQPTSTTTSVTPSCRRQRYNIAAANPLLAEKLAAPS 123


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 73  RDGNRNVLEFAYKLWIGEGKEIVKHYFPVQFRQVLSESNVKIINKRDNLAIKLGAAT 129
           R+G  +VL+ ++ L    G  +++ Y P     VLS  +  I  +  +  + LG  T
Sbjct: 227 REGEFSVLQVSFNLQRHTGYFLIQVYVPCVLIVVLSWVSFWIHREATSDRVGLGITT 283


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,041
Number of Sequences: 429
Number of extensions: 3242
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 262
length of database: 140,377
effective HSP length: 57
effective length of query: 205
effective length of database: 115,924
effective search space: 23764420
effective search space used: 23764420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)