GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004463-TA|BGIBMGA004463-PA|IPR004943|Lepidopteran low
molecular weight lipoprotein
         (261 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   4.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.5  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 20  AVGLVTSRDRYVQIIYDAVNTEDYAKAVTASVH 52
           A GL+TSRD    + +    +  Y + + +  H
Sbjct: 298 AAGLLTSRDFLSSLAFRVFQSTQYIRHIKSPYH 330


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 23  LVTSRDRYVQIIYDAVNTEDYAKAVTASVHLRRETRGDVVVNAVTRLIEDG 73
           L ++ DR  Q+       E+  +    ++    + +GDV    +T L E+G
Sbjct: 552 LASNNDRIRQVTKCKATNEETYRGGKGALSCLLDGKGDVAFVPLTALSEEG 602


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 23  LVTSRDRYVQIIYDAVNTEDYAKAVTASVHLRRETRGDVVVNAVTRLIEDG 73
           L ++ DR  Q+       E+  +    ++    + +GDV    +T L E+G
Sbjct: 552 LASNNDRIRQVTKCKATNEETYRGGKGALSCLLDGKGDVAFVPLTALSEEG 602


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 23  LVTSRDRYVQIIYDAVNTEDYAKAVTASVHLRRETRGDVVVNAVTRLIEDG 73
           L ++ DR  Q+       E+  +    ++    + +GDV    +T L E+G
Sbjct: 552 LASNNDRIRQVTKCKATNEETYRGGKGALSCLLDGKGDVAFVPLTALSEEG 602


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 152 FVPIWEDNRVYFKIFNIRRRQYLK 175
           ++P++   +VY+KIF   RR  L+
Sbjct: 212 YIPLFVMIQVYYKIFCAARRIVLE 235


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,349
Number of Sequences: 429
Number of extensions: 2687
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 261
length of database: 140,377
effective HSP length: 56
effective length of query: 205
effective length of database: 116,353
effective search space: 23852365
effective search space used: 23852365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)