GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004462-TA|BGIBMGA004462-PA|IPR002469|Peptidase S9B,
dipeptidylpeptidase IV N-terminal, IPR004943|Lepidopteran low
molecular weight lipoprotein
         (115 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   0.91 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   1.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   6.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   8.4  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 0.91
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 7   TPKGHGLITVKDYDIYYRPAPRS 29
           TP+  G     D DI  RP PRS
Sbjct: 912 TPRSPGRAWPGDSDIRQRPIPRS 934


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 35  VTDTGVPGTIHNGVPDWL 52
           + D  + GT  N VP+W+
Sbjct: 339 IIDNWIKGTPQNNVPNWV 356


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 62  LEGDVMFYIFNRKFNQALK 80
           L GD + Y+F    N++LK
Sbjct: 495 LHGDEVEYVFGHPLNKSLK 513


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 72   NRKFNQALKLGRA--VDCDGDRIVYSHYG 98
            N  FN + +       +CD D++V  +YG
Sbjct: 1871 NSSFNDSKESNEISEAECDRDQLVNRNYG 1899


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 102 GQPELYGWHISA 113
           G P L GW++ A
Sbjct: 16  GPPRLLGWNVPA 27


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.143    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,116
Number of Sequences: 429
Number of extensions: 1584
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 115
length of database: 140,377
effective HSP length: 50
effective length of query: 65
effective length of database: 118,927
effective search space:  7730255
effective search space used:  7730255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)