GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004452-TA|BGIBMGA004452-PA|IPR000462|CDP-alcohol
phosphatidyltransferase
         (396 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    24   2.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           24   2.6  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   4.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   6.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   6.0  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
          esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 22 KYSAIDTSPLSNYVMHPSWNFITRVRRFIPKWIAPNLITFAGFVCM 67
          +Y A +  P   Y + P   F  +  + IP WI     T  GF C+
Sbjct: 44 QYEAYEGIP---YALPPVGKFRFKAPQKIPAWIGELSATKFGFPCL 86


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 22 KYSAIDTSPLSNYVMHPSWNFITRVRRFIPKWIAPNLITFAGFVCM 67
          +Y A +  P   Y + P   F  +  + IP WI     T  GF C+
Sbjct: 44 QYEAYEGIP---YALPPVGKFRFKAPQKIPAWIGELSATKFGFPCL 86


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 59  ITFAGFVCMVIVILLLTIFDYDFHGAER 86
           IT+ G+V   +  L+ TIF+ D+  A R
Sbjct: 366 ITWLGYVNSALNPLIYTIFNLDYRRAFR 393


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 193 YLPWGYDVSMWTSSMIFIVAGLYTPGLVKF--HVYGDVSFALFFEVLIHLVGLLGTAPVA 250
           Y P  +    WT +   I  G++T  ++KF    Y    +  +  VL  L GL     + 
Sbjct: 485 YYPCCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTYEYPWWSHVLGWLCGLSSMLCIP 544

Query: 251 VYNVYL 256
            Y +Y+
Sbjct: 545 GYMIYI 550


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 193 YLPWGYDVSMWTSSMIFIVAGLYTPGLVKF--HVYGDVSFALFFEVLIHLVGLLGTAPVA 250
           Y P  +    WT +   I  G++T  ++KF    Y    +  +  VL  L GL     + 
Sbjct: 538 YYPCCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTYEYPWWSHVLGWLCGLSSMLCIP 597

Query: 251 VYNVYL 256
            Y +Y+
Sbjct: 598 GYMIYI 603


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.329    0.144    0.457 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,401
Number of Sequences: 429
Number of extensions: 4892
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 5
length of query: 396
length of database: 140,377
effective HSP length: 59
effective length of query: 337
effective length of database: 115,066
effective search space: 38777242
effective search space used: 38777242
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 45 (22.2 bits)