GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004449-TA|BGIBMGA004449-PA|IPR012336|Thioredoxin-like
fold
         (200 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.1  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.0  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   8.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 160 RRVSKDAAMYGTEWRFHNAFKPHAQYKK-KFSDLAEA 195
           +RV +   +Y T      A+KPH +++  +  D AEA
Sbjct: 622 KRVLQAPPLYDTNSLMDEAYKPHKKFRALRQKDSAEA 658


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/59 (22%), Positives = 25/59 (42%)

Query: 54  IENFYKIYENVKHRNFPLEVIYVPTDETEDDMKACYEEQANWFTLKLSDSLVPALVYIY 112
           I N    ++NV     P+  I      T    +  +E+  NWF+  ++ ++   +  IY
Sbjct: 149 IANKINSWDNVVVAYEPVWAIGTGKTATPQQAQEVHEKLRNWFSKNVNQTVAETVRIIY 207


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 21  NKKDEIVPWHWIEENADILVLLFTAKGIDKDGIIEN 56
           N+ D +    W+E+N   + +L     I+ D  ++N
Sbjct: 67  NQNDILKVIEWVEKNLGAIDILINNATINIDVTLQN 102


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,552
Number of Sequences: 429
Number of extensions: 3080
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 200
length of database: 140,377
effective HSP length: 55
effective length of query: 145
effective length of database: 116,782
effective search space: 16933390
effective search space used: 16933390
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)