GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004448-TA|BGIBMGA004448-PA|undefined
         (221 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex det...    26   0.24 
AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex det...    26   0.24 
AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex det...    26   0.24 
AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex det...    26   0.24 
AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex det...    26   0.24 
AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex det...    26   0.24 
AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex det...    26   0.24 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    26   0.24 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.2  

>AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 62  ERERLVTRWLAEANEALVRRDRPPRYKPRSSERRPDFLDRRPVPEWSDNFLLGRRNGSVE 121
           E ERL  + + E     +RR R  +   RS  R P+   R      S  F+L  +   +E
Sbjct: 51  EHERLKKKMILEYE---LRRAREKKLSKRSKSRSPESRGRSNASNTSKTFILSEK---LE 104

Query: 122 PEDDTS 127
             D TS
Sbjct: 105 SSDGTS 110


>AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 62  ERERLVTRWLAEANEALVRRDRPPRYKPRSSERRPDFLDRRPVPEWSDNFLLGRRNGSVE 121
           E ERL  + + E     +RR R  +   RS  R P+   R      S  F+L  +   +E
Sbjct: 51  EHERLKKKMILEYE---LRRAREKKLSKRSKSRSPESRGRSNASNTSKTFILSEK---LE 104

Query: 122 PEDDTS 127
             D TS
Sbjct: 105 SSDGTS 110


>AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 62  ERERLVTRWLAEANEALVRRDRPPRYKPRSSERRPDFLDRRPVPEWSDNFLLGRRNGSVE 121
           E ERL  + + E     +RR R  +   RS  R P+   R      S  F+L  +   +E
Sbjct: 51  EHERLKKKMILEYE---LRRAREKKLSKRSKSRSPESRGRSNASNTSKTFILSEK---LE 104

Query: 122 PEDDTS 127
             D TS
Sbjct: 105 SSDGTS 110


>AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 62  ERERLVTRWLAEANEALVRRDRPPRYKPRSSERRPDFLDRRPVPEWSDNFLLGRRNGSVE 121
           E ERL  + + E     +RR R  +   RS  R P+   R      S  F+L  +   +E
Sbjct: 51  EHERLKKKMILEYE---LRRAREKKLSKRSKSRSPESRGRSNASNTSKTFILSEK---LE 104

Query: 122 PEDDTS 127
             D TS
Sbjct: 105 SSDGTS 110


>AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 62  ERERLVTRWLAEANEALVRRDRPPRYKPRSSERRPDFLDRRPVPEWSDNFLLGRRNGSVE 121
           E ERL  + + E     +RR R  +   RS  R P+   R      S  F+L  +   +E
Sbjct: 51  EHERLKKKMILEYE---LRRAREKKLSKRSKSRSPESRGRSNASNTSKTFILSEK---LE 104

Query: 122 PEDDTS 127
             D TS
Sbjct: 105 SSDGTS 110


>AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 62  ERERLVTRWLAEANEALVRRDRPPRYKPRSSERRPDFLDRRPVPEWSDNFLLGRRNGSVE 121
           E ERL  + + E     +RR R  +   RS  R P+   R      S  F+L  +   +E
Sbjct: 51  EHERLKKKMILEYE---LRRAREKKLSKRSKSRSPESRGRSNASNTSKTFILSEK---LE 104

Query: 122 PEDDTS 127
             D TS
Sbjct: 105 SSDGTS 110


>AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 62  ERERLVTRWLAEANEALVRRDRPPRYKPRSSERRPDFLDRRPVPEWSDNFLLGRRNGSVE 121
           E ERL  + + E     +RR R  +   RS  R P+   R      S  F+L  +   +E
Sbjct: 51  EHERLKKKMILEYE---LRRAREKKLSKRSKSRSPESRGRSNASNTSKTFILSEK---LE 104

Query: 122 PEDDTS 127
             D TS
Sbjct: 105 SSDGTS 110


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 62  ERERLVTRWLAEANEALVRRDRPPRYKPRSSERRPDFLDRRPVPEWSDNFLLGRRNGSVE 121
           E ERL  + + E     +RR R  +   RS  R P+   R      S  F+L  +   +E
Sbjct: 51  EHERLKKKMILEYE---LRRAREKKLSKRSKSRSPESRGRSNASNTSKTFILSEK---LE 104

Query: 122 PEDDTS 127
             D TS
Sbjct: 105 SSDGTS 110


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 127 SEVMTLKDFVDKFSLPRVVKFEGEDRPVLLYRVLE 161
           S ++   DFVDK  + + VK +       + RVLE
Sbjct: 429 SGIVKCTDFVDKAMVKQYVKVKHSATLGYISRVLE 463


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 175 KGKLVGKPLYIPDS 188
           K K++GKP   PDS
Sbjct: 739 KPKILGKPTISPDS 752


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.139    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,198
Number of Sequences: 429
Number of extensions: 2987
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 10
length of query: 221
length of database: 140,377
effective HSP length: 55
effective length of query: 166
effective length of database: 116,782
effective search space: 19385812
effective search space used: 19385812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)