GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004447-TA|BGIBMGA004447-
PA|IPR008040|Hydantoinaseoxoprolinase, N-terminal,
IPR002821|Hydantoinase/oxoprolinase, IPR003692|Hydantoinase
B/oxoprolinase, IPR006121|Heavy metal transport/detoxification protein
         (1290 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   2.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   7.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   7.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   9.2  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    24   9.2  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    24   9.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 523 KYAGILSAYGMALAHIVHEAQEPSACVYSPENYQQLDRKLDVLSAVCKDKLLAQGIPASR 582
           K+   LS++    AH V +A +   C Y  +      R+L+V   VC D   +QG     
Sbjct: 931 KFLQELSSWVSDNAHKVVDASDVW-CYYGGDARPAYRRRLNVNETVCSD-YFSQGGVIES 988

Query: 583 IVLEPYLHL 591
           I++  YL L
Sbjct: 989 IMVSDYLPL 997


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 532 GMALAHIVHE-AQEPSACVYSPENYQQLDR 560
           GM+  +I  E  Q+P  C    ENYQ + R
Sbjct: 384 GMSDTYISWEDTQDPQGCGAGKENYQTMSR 413


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 532 GMALAHIVHE-AQEPSACVYSPENYQQLDR 560
           GM+  +I  E  Q+P  C    ENYQ + R
Sbjct: 384 GMSDTYISWEDTQDPQGCGAGKENYQTMSR 413


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 9.2
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 122 RPEVLYKEVVEVDCRVIPALEDRCQLDKAGKNWKEVYGTTGEKMLVIKDIDEDAVRLDL 180
           +P  +YK   E+D    P  E  C + K G    + Y      +   +D ++  V +DL
Sbjct: 136 KPPAIYKSFCEIDVEYFPFDEQTCFM-KFGSWTYDGYTVDLRHLAQTEDSNQIEVGIDL 193


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 9.2
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 770 TSISVNIKERLDFS--CALFGPTGGLVSNAPHIP-----VHLGAMQEAVQYQMKVRGDTL 822
           TS +V + ++L+ S   +LF    G+  NA  +      +H     ++    ++V+ DT+
Sbjct: 96  TSKTVILSDKLESSDDISLFRGPEGIQINATELQKIKLEIHRDLPGKSTTTTVEVKRDTI 155

Query: 823 RPGDVLLANHPKAG 836
            P DV+L      G
Sbjct: 156 NPEDVILIRRTGEG 169


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 23.8 bits (49), Expect = 9.2
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 491 AAQHALACFGGAGGQHACSVARRLGISTVLIHKYAGILSAYGMALA 536
           AA  A+   G AG +      R L +  +LI  +A +L  YG+ +A
Sbjct: 106 AAGFAIGIVGDAGVRGTAQQPR-LFVGMILILIFAEVLGLYGLIVA 150


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 331,792
Number of Sequences: 429
Number of extensions: 13318
Number of successful extensions: 30
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 6
length of query: 1290
length of database: 140,377
effective HSP length: 66
effective length of query: 1224
effective length of database: 112,063
effective search space: 137165112
effective search space used: 137165112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)