GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004446-TA|BGIBMGA004446-PA|IPR000194|ATPase, F1/V1/A1
complex, alpha/beta subunit, nucleotide-binding
         (1094 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   1.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    26   1.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   2.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   3.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   3.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   3.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 350 PPIHQETDEIDFINGNDEDQIEQAQKSPVHLLEDVEVPSTQHSS 393
           PP   E D+ +     +E ++E+A   P+  LED+   ST   S
Sbjct: 690 PPQVDEVDDKELSGAEEEKEVEKALLKPLLSLEDLVRFSTLEGS 733


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 16/56 (28%), Positives = 23/56 (41%)

Query: 914 YRRTNRNAENRHSMIHYDHEPSKLQLKERPITVYEPLHLDYRDSPSLGSPKTSKND 969
           Y+  N  A+ R    HY    S   LK++P+     L +D  D   L   +   ND
Sbjct: 450 YKSLNLAAQKREYYSHYVAFKSLSYLKKQPVIANGSLEVDVIDGRVLSVKRELGND 505


>AF388659-3|AAK71993.1|  548|Apis mellifera
            1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 962  SPKTSKNDVRSM-DSLPTD--SPQMSRNELRCDSDCRSLDSPKVKADYYREVLDSPK--- 1015
            SP +S++   S+  S P    + + S+N   C+ D   L+  ++++D  +EV D  +   
Sbjct: 37   SPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLEIESDNSKEVNDKKEENF 96

Query: 1016 LVGAIRN 1022
            +V  +RN
Sbjct: 97   IVDRLRN 103


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 776 TDQTIDKEDTTSITPSSRSATSGMTNSLGMTSSIGATSSY 815
           T  TID E  T+    S  A S MTN+L   S + +TS Y
Sbjct: 238 TKMTIDGESYTAQDGISGMALSPMTNNL-YYSPVASTSLY 276


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 776 TDQTIDKEDTTSITPSSRSATSGMTNSLGMTSSIGATSSY 815
           T  TID E  T+    S  A S MTN+L   S + +TS Y
Sbjct: 238 TKMTIDGESYTAQDGISGMALSPMTNNL-YYSPVASTSLY 276


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 776 TDQTIDKEDTTSITPSSRSATSGMTNSLGMTSSIGATSSY 815
           T  TID E  T+    S  A S MTN+L   S + +TS Y
Sbjct: 238 TKMTIDGESYTAQDGISGMALSPMTNNL-YYSPVASTSLY 276


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 286,920
Number of Sequences: 429
Number of extensions: 12009
Number of successful extensions: 52
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 8
length of query: 1094
length of database: 140,377
effective HSP length: 65
effective length of query: 1029
effective length of database: 112,492
effective search space: 115754268
effective search space used: 115754268
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)