GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004445-TA|BGIBMGA004445-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (302 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...   214   7e-58
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    24   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score =  214 bits (523), Expect = 7e-58
 Identities = 110/269 (40%), Positives = 153/269 (56%), Gaps = 6/269 (2%)

Query: 32  LSTGGYFRCRVYXXXXXXXXXXCRCGERKQTRIVGGEEAKINEFRMMVGLVDISIRQIKC 91
           L+  G F C V           C CG +  +RIVGG    INEF MM G+       + C
Sbjct: 129 LTPPGRFFCEVRPIKRVKDSTNCNCGWKNPSRIVGGTNTGINEFPMMAGIKRTYEPGMIC 188

Query: 92  GGALISNRHVLTAAHCIANQRTDNIGVIVGEHDVSIGTESAAQG-YVVQRFIIHPLFTAS 150
           G  +IS R+VLTAAHCI ++ T  + ++VGEHD S  TE+ A   + + + IIHP +   
Sbjct: 189 GATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDII 248

Query: 151 NYD----YDVAIVETAKEITFSDIVGPACLPFKFVNTNFTGLKVTILGWGTLFPGGPTSN 206
             D     D+A+++T K+I F D VGPACLPF+    +F G  VT+LGWG     G  S+
Sbjct: 249 EKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSH 308

Query: 207 VLRKVDLDIISQSTCRSYESTLTDRQMCTFTPGKDACQDDSGGPLLYTDPSTGLFFNLGI 266
           +L+K  L++++Q  C  Y   +    MC +  GKDACQ DSGGP+L+ +P T    N+GI
Sbjct: 309 ILQKTTLNMLTQVECYKYYGNIMVNAMCAYAKGKDACQMDSGGPVLWQNPRTKRLVNIGI 368

Query: 267 VSYGRFCASNSPGINMRVTAVLDWIVSST 295
           +S+G  C    P  N +V + +DWIVS T
Sbjct: 369 ISWGAEC-GKYPNGNTKVGSYIDWIVSQT 396


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 75  FRMMVGLVDISIRQIKCGGALI 96
           FR+  GLVD  +R  KC  +L+
Sbjct: 396 FRIQAGLVDELVRGTKCDVSLL 417


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 90   KCGGALISNRHVLTAAHCIANQRTDNIGVIVGEHDVSIGTESAAQGY 136
            +C G  ++    L    CI  +RT    VI       + TE +  GY
Sbjct: 1633 QCEGDSLNVAKSLQDHDCIRQERTQQRNVISDSESGRLDTEMSTWGY 1679


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 4   KSTAGEEPYLQLLLAKDLVWVRRLIASSLSTGGYF 38
           + T G + Y       D+V     +A+SLS G YF
Sbjct: 486 EGTIGSKMYFIQEGIVDIVMANGEVATSLSDGSYF 520


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 4   KSTAGEEPYLQLLLAKDLVWVRRLIASSLSTGGYF 38
           + T G + Y       D+V     +A+SLS G YF
Sbjct: 454 EGTIGSKMYFIQEGIVDIVMANGEVATSLSDGSYF 488


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,154
Number of Sequences: 429
Number of extensions: 3044
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 302
length of database: 140,377
effective HSP length: 57
effective length of query: 245
effective length of database: 115,924
effective search space: 28401380
effective search space used: 28401380
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 44 (21.8 bits)