GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004443-TA|BGIBMGA004443-PA|undefined
         (80 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   5.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    19   7.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    19   7.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 10  CQNGLDLWILRSWV 23
           CQ G+  +I+ SW+
Sbjct: 652 CQPGVTAFIVTSWL 665


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic
          acetylcholine receptor alpha4subunit protein.
          Length = 569

 Score = 19.0 bits (37), Expect = 7.6
 Identities = 5/14 (35%), Positives = 11/14 (78%)

Query: 15 DLWILRSWVMWEVR 28
          +LW+ +SW  +++R
Sbjct: 78 NLWVEQSWYDYKLR 91


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic
          acetylcholine receptor alpha4subunit protein.
          Length = 569

 Score = 19.0 bits (37), Expect = 7.6
 Identities = 5/14 (35%), Positives = 11/14 (78%)

Query: 15 DLWILRSWVMWEVR 28
          +LW+ +SW  +++R
Sbjct: 78 NLWVEQSWYDYKLR 91


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.333    0.145    0.485 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,553
Number of Sequences: 429
Number of extensions: 500
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 80
length of database: 140,377
effective HSP length: 47
effective length of query: 33
effective length of database: 120,214
effective search space:  3967062
effective search space used:  3967062
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (20.1 bits)
S2: 36 (18.6 bits)