GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004441-TA|BGIBMGA004441-PA|IPR000387|Tyrosine specific
protein phosphatase and dual specificity protein phosphatase,
IPR000340|Dual specificity protein phosphatase
         (229 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               25   0.77 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.77 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.8  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   3.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.4  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   7.2  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   7.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.5  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 46 DIEVDAYPPLKFSWVIPKKISAMAFPRNKENLK 78
          DI+ D     K SW   KK+ A    ++ +NLK
Sbjct: 24 DIKKDCRKESKVSWAALKKMKAGDMEQDDQNLK 56


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 95  KKPPVDDIPRLKWTEVPIEEFELPSVEQIKKFMDVCK-RADKNGEVLGIHCRQGRSRSGV 153
           K  P + +  L W E+P    E+  VE  K   +V K R  +  E+L    ++ ++ +  
Sbjct: 374 KAKPSEVVQILGWKELPNVGDEILEVENDKILQEVIKFRQKQRAEIL---AKEHKAAADQ 430

Query: 154 MLACYLVHFHRFL 166
            L  +L+ + + L
Sbjct: 431 KLEKHLIEYKKML 443


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 167 PDQAVNAIRMIRPGSCDFPEHEEAVGKYFEYLTEDN 202
           P  AV A R I   SC +  HE+    +  +  ED+
Sbjct: 326 PRSAVLAAREITSSSCSYMAHEKLSYAFSVWRMEDD 361


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 152 GVMLACYLVHFHRFLPDQAVNAIRMIRPGSCDFPEHE 188
           GV+L   LV +  F  +        I+ GS D+P  E
Sbjct: 99  GVILYILLVGYPPFWDEDQHRLYAQIKTGSYDYPSPE 135


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 31  IRNDLTVIIPENPFPDI 47
           +RN+   I  E P+PDI
Sbjct: 210 VRNEAFYICCEEPYPDI 226


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 84  GITHLVTLTAGKKPPVDDIPRLKWTEVPIEEFELPSVEQIKKFMDVCKRADKNGEV 139
           G  HL+     ++  V  +   K  ++ + + ++ S +QIK  +DV +++ +  E+
Sbjct: 145 GALHLLFRHFSQRQEV--LQAFKQVQLLVSDSDVESYKQIKSDLDVLRQSVEKSEL 198


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 84  GITHLVTLTAGKKPPVDDIPRLKWTEVPIEEFELPSVEQIKKFMDVCKRADKNGEV 139
           G  HL+     ++  V  +   K  ++ + + ++ S +QIK  +DV +++ +  E+
Sbjct: 113 GALHLLFRHFSQRQEV--LQAFKQVQLLVSDSDVESYKQIKSDLDVLRQSVEKSEL 166


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 35   LTVIIPENPFPDIEVD 50
            L ++  EN +P++E+D
Sbjct: 1160 LIIVQAENAYPEVELD 1175


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.139    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,338
Number of Sequences: 429
Number of extensions: 2958
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 8
length of query: 229
length of database: 140,377
effective HSP length: 56
effective length of query: 173
effective length of database: 116,353
effective search space: 20129069
effective search space used: 20129069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)