GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004436-TA|BGIBMGA004436-PA|IPR002345|Lipocalin,
IPR007114|Major facilitator superfamily, IPR005829|Sugar transporter
superfamily, IPR005828|General substrate transporter
         (449 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   0.98 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   2.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   5.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   9.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   9.1  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.98
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 182 WLRSLPKDHKLVNEEIDRLIVEQTTCEPKFSPK--LLFSDKTAVKAFWVALIVNLTREFC 239
           W R L + H  +     RL  +      +F  K   L SD+  +  F++  IV+ T   C
Sbjct: 390 WSRVLGRVHATIERNEKRLAEQDRRERMEFDWKQVALVSDRALLCVFFLTTIVSTTVILC 449

Query: 240 G 240
           G
Sbjct: 450 G 450


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 304 VAGFSMALLGVWFYLQGIGVFMPGWV 329
           +A FS+ L  +  YLQ + V  P W+
Sbjct: 316 LAAFSLMLTSILRYLQELHVDAPTWI 341


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 5.2
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 15  DTPSNAPVTETEVSWMAS-IMFIFAPIAVFI 44
           D P  A V   +V WMA  +MF+FA +  F+
Sbjct: 252 DIPPVAYVKALDV-WMAGCMMFVFAALGEFV 281


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 365 VATLVMAISLATDFALLRLFAPLTELI 391
           + TL +AISL+    L+ L++P   +I
Sbjct: 737 ITTLCVAISLSATVTLVCLYSPKIYII 763


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 365 VATLVMAISLATDFALLRLFAPLTELI 391
           + TL +AISL+    L+ L++P   +I
Sbjct: 827 ITTLCVAISLSATVTLVCLYSPKIYII 853


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.141    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,644
Number of Sequences: 429
Number of extensions: 4657
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 449
length of database: 140,377
effective HSP length: 60
effective length of query: 389
effective length of database: 114,637
effective search space: 44593793
effective search space used: 44593793
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)