GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004434-TA|BGIBMGA004434-PA|undefined
         (97 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   0.89 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   2.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   4.7  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 0.89
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 6   LRHFQDELAYIQVPNNNIGTVSLLSNITRSVEDLSFRRYTPKLVICN 52
           L+H +  +  +  P+N +  V+L + +++  E     R   KL +CN
Sbjct: 66  LKHLRAAVLVLTNPSNEVVAVALGALLSKGEESFPTARSLEKL-LCN 111


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 26  VSLLSNITRSVEDLSFRRYTPKLVICNGTIAAFTLHHQ 63
           +SL   + R++    F+ Y P ++I   +  +F ++H+
Sbjct: 231 LSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHE 268


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 51  CNGTIAAFTLHHQCVKNFDYHSS 73
           C+G +A+ T +H       +H+S
Sbjct: 500 CSGEVASLTEYHHVAPPSGHHAS 522


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 3    ESRLRHFQDELAYIQVPNNNIGTV 26
            + R    +DEL YI  PN  +  V
Sbjct: 1633 DKRRPDLRDELGYIAPPNRKLPPV 1656


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 68  FDYHSSHILTVKNK 81
           +DY S++I  VKNK
Sbjct: 319 WDYDSTYIPKVKNK 332


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,610
Number of Sequences: 429
Number of extensions: 840
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 97
length of database: 140,377
effective HSP length: 49
effective length of query: 48
effective length of database: 119,356
effective search space:  5729088
effective search space used:  5729088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.5 bits)
S2: 38 (19.4 bits)